Hb_018591_040

Information

Type -
Description -
Location Contig18591: 52845-53495
Sequence    

Annotation

kegg
ID rcu:RCOM_0598020
description hypothetical protein
nr
ID XP_012072302.1
description PREDICTED: protein VAC14 homolog [Jatropha curcas]
swissprot
ID Q9ZU97
description Protein VAC14 homolog OS=Arabidopsis thaliana GN=VAC14 PE=1 SV=2
trembl
ID A0A067L1Z3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_04757 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_018591_040 0.0 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
2 Hb_007044_280 0.0142628906 - - PREDICTED: uncharacterized protein LOC105123357 [Populus euphratica]
3 Hb_006995_020 0.0754410414 - - hypothetical protein glysoja_017339 [Glycine soja]
4 Hb_007659_010 0.1419021411 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Jatropha curcas]
5 Hb_002224_050 0.2163419762 - - PREDICTED: uncharacterized protein LOC104764484 isoform X1 [Camelina sativa]
6 Hb_041476_010 0.2570251078 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
7 Hb_004041_010 0.2594233409 - - conserved hypothetical protein [Ricinus communis]
8 Hb_041813_070 0.2791115014 - - -
9 Hb_005241_020 0.2893676561 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
10 Hb_001377_440 0.2953284821 - - -
11 Hb_001969_050 0.3112407322 - - PREDICTED: uncharacterized protein LOC105634920 isoform X1 [Jatropha curcas]
12 Hb_001519_230 0.3174447872 - - PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
13 Hb_001723_050 0.318370722 - - galactinol synthase-2 [Manihot esculenta]
14 Hb_000541_010 0.3267199783 - - polyprotein [Citrus endogenous pararetrovirus]
15 Hb_003245_010 0.3304046467 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_165958_010 0.3307232036 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_004947_070 0.3326111378 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
18 Hb_007595_060 0.3377483692 - - conserved hypothetical protein [Ricinus communis]
19 Hb_095399_010 0.344253515 - - cytochrome b/f complex subunit IV [Sphagnum fimbriatum]
20 Hb_117252_010 0.3637427298 - - hypothetical protein [Pseudomonas tolaasii]

Gene co-expression network

sample Hb_018591_040 Hb_018591_040 Hb_007044_280 Hb_007044_280 Hb_018591_040--Hb_007044_280 Hb_006995_020 Hb_006995_020 Hb_018591_040--Hb_006995_020 Hb_007659_010 Hb_007659_010 Hb_018591_040--Hb_007659_010 Hb_002224_050 Hb_002224_050 Hb_018591_040--Hb_002224_050 Hb_041476_010 Hb_041476_010 Hb_018591_040--Hb_041476_010 Hb_004041_010 Hb_004041_010 Hb_018591_040--Hb_004041_010 Hb_007044_280--Hb_006995_020 Hb_007044_280--Hb_007659_010 Hb_007044_280--Hb_002224_050 Hb_007044_280--Hb_041476_010 Hb_007044_280--Hb_004041_010 Hb_006995_020--Hb_007659_010 Hb_001377_440 Hb_001377_440 Hb_006995_020--Hb_001377_440 Hb_041813_070 Hb_041813_070 Hb_006995_020--Hb_041813_070 Hb_001969_050 Hb_001969_050 Hb_006995_020--Hb_001969_050 Hb_007659_010--Hb_002224_050 Hb_007659_010--Hb_041476_010 Hb_000541_010 Hb_000541_010 Hb_007659_010--Hb_000541_010 Hb_003245_010 Hb_003245_010 Hb_007659_010--Hb_003245_010 Hb_002224_050--Hb_041476_010 Hb_002224_050--Hb_000541_010 Hb_002224_050--Hb_003245_010 Hb_165958_010 Hb_165958_010 Hb_002224_050--Hb_165958_010 Hb_117252_010 Hb_117252_010 Hb_002224_050--Hb_117252_010 Hb_041476_010--Hb_000541_010 Hb_041476_010--Hb_003245_010 Hb_041476_010--Hb_165958_010 Hb_041476_010--Hb_117252_010 Hb_012253_020 Hb_012253_020 Hb_004041_010--Hb_012253_020 Hb_004041_010--Hb_007659_010 Hb_004041_010--Hb_002224_050 Hb_028751_010 Hb_028751_010 Hb_004041_010--Hb_028751_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.40247
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.174375

CAGE analysis