Hb_004041_010

Information

Type -
Description -
Location Contig4041: 19092-21710
Sequence    

Annotation

kegg
ID rcu:RCOM_1318690
description hypothetical protein
nr
ID XP_002529264.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9STE5
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1318690 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004041_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_012253_020 0.2208431661 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_007659_010 0.2328634098 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Jatropha curcas]
4 Hb_002224_050 0.2505206277 - - PREDICTED: uncharacterized protein LOC104764484 isoform X1 [Camelina sativa]
5 Hb_028751_010 0.2529786047 - - -
6 Hb_007044_280 0.2535238485 - - PREDICTED: uncharacterized protein LOC105123357 [Populus euphratica]
7 Hb_018591_040 0.2594233409 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
8 Hb_153665_010 0.262324615 - - PREDICTED: uncharacterized protein LOC104245945 [Nicotiana sylvestris]
9 Hb_041476_010 0.2683262082 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
10 Hb_002123_030 0.275192515 - - hypothetical protein VITISV_003767 [Vitis vinifera]
11 Hb_005241_020 0.2849807719 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
12 Hb_000599_070 0.2912826585 - - PREDICTED: patellin-4-like [Jatropha curcas]
13 Hb_014988_030 0.2986446388 - - hypothetical protein VITISV_006810 [Vitis vinifera]
14 Hb_006995_020 0.2992437888 - - hypothetical protein glysoja_017339 [Glycine soja]
15 Hb_086993_010 0.3054294536 - - -
16 Hb_001511_230 0.3070074532 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
17 Hb_000541_010 0.3089900417 - - polyprotein [Citrus endogenous pararetrovirus]
18 Hb_095399_010 0.3097439758 - - cytochrome b/f complex subunit IV [Sphagnum fimbriatum]
19 Hb_009042_010 0.3106661803 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_003245_010 0.3114295086 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_004041_010 Hb_004041_010 Hb_012253_020 Hb_012253_020 Hb_004041_010--Hb_012253_020 Hb_007659_010 Hb_007659_010 Hb_004041_010--Hb_007659_010 Hb_002224_050 Hb_002224_050 Hb_004041_010--Hb_002224_050 Hb_028751_010 Hb_028751_010 Hb_004041_010--Hb_028751_010 Hb_007044_280 Hb_007044_280 Hb_004041_010--Hb_007044_280 Hb_018591_040 Hb_018591_040 Hb_004041_010--Hb_018591_040 Hb_002123_030 Hb_002123_030 Hb_012253_020--Hb_002123_030 Hb_153665_010 Hb_153665_010 Hb_012253_020--Hb_153665_010 Hb_030370_010 Hb_030370_010 Hb_012253_020--Hb_030370_010 Hb_000599_070 Hb_000599_070 Hb_012253_020--Hb_000599_070 Hb_009042_010 Hb_009042_010 Hb_012253_020--Hb_009042_010 Hb_188450_010 Hb_188450_010 Hb_012253_020--Hb_188450_010 Hb_007659_010--Hb_002224_050 Hb_041476_010 Hb_041476_010 Hb_007659_010--Hb_041476_010 Hb_007659_010--Hb_007044_280 Hb_007659_010--Hb_018591_040 Hb_000541_010 Hb_000541_010 Hb_007659_010--Hb_000541_010 Hb_003245_010 Hb_003245_010 Hb_007659_010--Hb_003245_010 Hb_002224_050--Hb_041476_010 Hb_002224_050--Hb_000541_010 Hb_002224_050--Hb_003245_010 Hb_165958_010 Hb_165958_010 Hb_002224_050--Hb_165958_010 Hb_117252_010 Hb_117252_010 Hb_002224_050--Hb_117252_010 Hb_001511_230 Hb_001511_230 Hb_028751_010--Hb_001511_230 Hb_004888_050 Hb_004888_050 Hb_028751_010--Hb_004888_050 Hb_007586_020 Hb_007586_020 Hb_028751_010--Hb_007586_020 Hb_000085_110 Hb_000085_110 Hb_028751_010--Hb_000085_110 Hb_000245_240 Hb_000245_240 Hb_028751_010--Hb_000245_240 Hb_007044_280--Hb_018591_040 Hb_006995_020 Hb_006995_020 Hb_007044_280--Hb_006995_020 Hb_007044_280--Hb_002224_050 Hb_007044_280--Hb_041476_010 Hb_018591_040--Hb_006995_020 Hb_018591_040--Hb_002224_050 Hb_018591_040--Hb_041476_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.431499
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0885774 0.336323

CAGE analysis