Hb_001511_230

Information

Type -
Description -
Location Contig1511: 270566-272438
Sequence    

Annotation

kegg
ID pop:POPTR_0008s06980g
description POPTRDRAFT_765584; hypothetical protein
nr
ID XP_012087237.1
description PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L8J1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01251 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_12785: 273200-273516
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001511_230 0.0 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
2 Hb_028751_010 0.1924729181 - - -
3 Hb_002123_030 0.2502952914 - - hypothetical protein VITISV_003767 [Vitis vinifera]
4 Hb_012253_020 0.2663647141 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_001799_220 0.2868631543 transcription factor TF Family: AP2 Ethylene-responsive transcription factor, putative [Ricinus communis]
6 Hb_000072_040 0.3028351729 - - -
7 Hb_004041_010 0.3070074532 - - conserved hypothetical protein [Ricinus communis]
8 Hb_016834_010 0.3140874163 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
9 Hb_030370_010 0.3201936263 - - PREDICTED: uncharacterized protein LOC104896222 [Beta vulgaris subsp. vulgaris]
10 Hb_031474_020 0.3225438587 - - -
11 Hb_133191_010 0.3294756857 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
12 Hb_020411_010 0.3301057934 - - phosphoprotein phosphatase, putative [Ricinus communis]
13 Hb_001496_140 0.3304435445 - - -
14 Hb_014988_030 0.3347653972 - - hypothetical protein VITISV_006810 [Vitis vinifera]
15 Hb_001496_020 0.3383332563 - - putative WRKY transcription factor 19 -like protein [Gossypium arboreum]
16 Hb_003297_040 0.3413076974 - - Disease resistance protein RPM1, putative [Ricinus communis]
17 Hb_008727_130 0.3482187169 - - hypothetical protein EUGRSUZ_J01958 [Eucalyptus grandis]
18 Hb_033286_020 0.3500287119 - - -
19 Hb_002639_010 0.3500482916 - - pseudouridylate synthase, putative [Ricinus communis]
20 Hb_002456_020 0.3531833982 - - Ankyrin repeat family protein [Theobroma cacao]

Gene co-expression network

sample Hb_001511_230 Hb_001511_230 Hb_028751_010 Hb_028751_010 Hb_001511_230--Hb_028751_010 Hb_002123_030 Hb_002123_030 Hb_001511_230--Hb_002123_030 Hb_012253_020 Hb_012253_020 Hb_001511_230--Hb_012253_020 Hb_001799_220 Hb_001799_220 Hb_001511_230--Hb_001799_220 Hb_000072_040 Hb_000072_040 Hb_001511_230--Hb_000072_040 Hb_004041_010 Hb_004041_010 Hb_001511_230--Hb_004041_010 Hb_028751_010--Hb_004041_010 Hb_004888_050 Hb_004888_050 Hb_028751_010--Hb_004888_050 Hb_007586_020 Hb_007586_020 Hb_028751_010--Hb_007586_020 Hb_000085_110 Hb_000085_110 Hb_028751_010--Hb_000085_110 Hb_000245_240 Hb_000245_240 Hb_028751_010--Hb_000245_240 Hb_002123_030--Hb_012253_020 Hb_030370_010 Hb_030370_010 Hb_002123_030--Hb_030370_010 Hb_002123_030--Hb_001799_220 Hb_153665_010 Hb_153665_010 Hb_002123_030--Hb_153665_010 Hb_000599_070 Hb_000599_070 Hb_002123_030--Hb_000599_070 Hb_009042_010 Hb_009042_010 Hb_002123_030--Hb_009042_010 Hb_012253_020--Hb_153665_010 Hb_012253_020--Hb_030370_010 Hb_012253_020--Hb_000599_070 Hb_012253_020--Hb_009042_010 Hb_188450_010 Hb_188450_010 Hb_012253_020--Hb_188450_010 Hb_001799_220--Hb_030370_010 Hb_001799_220--Hb_012253_020 Hb_005405_010 Hb_005405_010 Hb_001799_220--Hb_005405_010 Hb_000832_350 Hb_000832_350 Hb_001799_220--Hb_000832_350 Hb_001799_220--Hb_000599_070 Hb_004228_040 Hb_004228_040 Hb_000072_040--Hb_004228_040 Hb_001496_020 Hb_001496_020 Hb_000072_040--Hb_001496_020 Hb_133191_010 Hb_133191_010 Hb_000072_040--Hb_133191_010 Hb_016834_010 Hb_016834_010 Hb_000072_040--Hb_016834_010 Hb_014988_030 Hb_014988_030 Hb_000072_040--Hb_014988_030 Hb_031474_020 Hb_031474_020 Hb_000072_040--Hb_031474_020 Hb_004041_010--Hb_012253_020 Hb_007659_010 Hb_007659_010 Hb_004041_010--Hb_007659_010 Hb_002224_050 Hb_002224_050 Hb_004041_010--Hb_002224_050 Hb_007044_280 Hb_007044_280 Hb_004041_010--Hb_007044_280 Hb_018591_040 Hb_018591_040 Hb_004041_010--Hb_018591_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.179688
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.216796 0.131006

CAGE analysis