Hb_014988_030

Information

Type -
Description -
Location Contig14988: 22004-24285
Sequence    

Annotation

kegg
ID vvi:104879534
description uncharacterized LOC104879534
nr
ID CAN74964.1
description hypothetical protein VITISV_006810 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BSK6
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_006810 PE=4 SV=1
Gene Ontology
ID GO:0005488
description hypothetical protein VITISV_006810

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014988_030 0.0 - - hypothetical protein VITISV_006810 [Vitis vinifera]
2 Hb_133191_010 0.0321726588 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
3 Hb_086993_010 0.0777889785 - - -
4 Hb_012253_020 0.2269872982 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_051731_010 0.2291002303 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
6 Hb_002123_030 0.2384407839 - - hypothetical protein VITISV_003767 [Vitis vinifera]
7 Hb_002090_010 0.2516603933 - - gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
8 Hb_153665_010 0.2538983223 - - PREDICTED: uncharacterized protein LOC104245945 [Nicotiana sylvestris]
9 Hb_030370_010 0.2601450157 - - PREDICTED: uncharacterized protein LOC104896222 [Beta vulgaris subsp. vulgaris]
10 Hb_000599_070 0.2653584221 - - PREDICTED: patellin-4-like [Jatropha curcas]
11 Hb_002072_050 0.2706513803 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
12 Hb_000915_190 0.2708961312 - - -
13 Hb_009042_010 0.2748169606 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_188450_010 0.2752743423 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_001799_220 0.2840245318 transcription factor TF Family: AP2 Ethylene-responsive transcription factor, putative [Ricinus communis]
16 Hb_000072_040 0.284420041 - - -
17 Hb_108557_010 0.2912922608 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
18 Hb_000832_340 0.2966518728 - - PREDICTED: psbP-like protein 2, chloroplastic isoform X3 [Nelumbo nucifera]
19 Hb_000418_160 0.2983987549 - - -
20 Hb_004041_010 0.2986446388 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_014988_030 Hb_014988_030 Hb_133191_010 Hb_133191_010 Hb_014988_030--Hb_133191_010 Hb_086993_010 Hb_086993_010 Hb_014988_030--Hb_086993_010 Hb_012253_020 Hb_012253_020 Hb_014988_030--Hb_012253_020 Hb_051731_010 Hb_051731_010 Hb_014988_030--Hb_051731_010 Hb_002123_030 Hb_002123_030 Hb_014988_030--Hb_002123_030 Hb_002090_010 Hb_002090_010 Hb_014988_030--Hb_002090_010 Hb_133191_010--Hb_086993_010 Hb_133191_010--Hb_051731_010 Hb_133191_010--Hb_012253_020 Hb_133191_010--Hb_002090_010 Hb_133191_010--Hb_002123_030 Hb_086993_010--Hb_051731_010 Hb_000915_190 Hb_000915_190 Hb_086993_010--Hb_000915_190 Hb_001706_030 Hb_001706_030 Hb_086993_010--Hb_001706_030 Hb_086993_010--Hb_012253_020 Hb_012253_020--Hb_002123_030 Hb_153665_010 Hb_153665_010 Hb_012253_020--Hb_153665_010 Hb_030370_010 Hb_030370_010 Hb_012253_020--Hb_030370_010 Hb_000599_070 Hb_000599_070 Hb_012253_020--Hb_000599_070 Hb_009042_010 Hb_009042_010 Hb_012253_020--Hb_009042_010 Hb_188450_010 Hb_188450_010 Hb_012253_020--Hb_188450_010 Hb_051731_010--Hb_001706_030 Hb_000832_340 Hb_000832_340 Hb_051731_010--Hb_000832_340 Hb_004048_030 Hb_004048_030 Hb_051731_010--Hb_004048_030 Hb_002123_030--Hb_030370_010 Hb_001799_220 Hb_001799_220 Hb_002123_030--Hb_001799_220 Hb_002123_030--Hb_153665_010 Hb_002123_030--Hb_000599_070 Hb_002123_030--Hb_009042_010 Hb_094002_010 Hb_094002_010 Hb_002090_010--Hb_094002_010 Hb_008055_030 Hb_008055_030 Hb_002090_010--Hb_008055_030 Hb_005595_030 Hb_005595_030 Hb_002090_010--Hb_005595_030 Hb_001880_020 Hb_001880_020 Hb_002090_010--Hb_001880_020 Hb_108557_010 Hb_108557_010 Hb_002090_010--Hb_108557_010 Hb_000418_160 Hb_000418_160 Hb_002090_010--Hb_000418_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0117705 0 0 0.0304301
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0214632 0.0559937

CAGE analysis