Hb_051731_010

Information

Type -
Description -
Location Contig51731: 2790-4489
Sequence    

Annotation

kegg
ID tcc:TCM_007817
description Gag protease polyprotein
nr
ID XP_012092566.1
description PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A0B0MQD4
description Phosphate import ATP-binding PstB 2 OS=Gossypium arboreum GN=F383_30012 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_051731_010 0.0 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
2 Hb_086993_010 0.1857745508 - - -
3 Hb_133191_010 0.2243814545 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
4 Hb_014988_030 0.2291002303 - - hypothetical protein VITISV_006810 [Vitis vinifera]
5 Hb_001706_030 0.2424309123 - - PREDICTED: uncharacterized protein LOC104880364 [Vitis vinifera]
6 Hb_000832_340 0.2428919748 - - PREDICTED: psbP-like protein 2, chloroplastic isoform X3 [Nelumbo nucifera]
7 Hb_004048_030 0.2470841877 - - hypothetical protein B456_009G371200, partial [Gossypium raimondii]
8 Hb_000419_100 0.2720790255 - - -
9 Hb_166230_010 0.2905917903 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
10 Hb_002072_050 0.2907406673 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
11 Hb_018746_010 0.2970466299 - - PREDICTED: uncharacterized protein LOC105629982 [Jatropha curcas]
12 Hb_002762_010 0.2981215631 - - hypothetical protein POPTR_0019s12360g [Populus trichocarpa]
13 Hb_001514_140 0.299009728 - - -
14 Hb_001257_150 0.3006354762 - - -
15 Hb_005428_040 0.3010989 - - -
16 Hb_000915_190 0.3023008439 - - -
17 Hb_043960_010 0.3054070008 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_010532_010 0.3057230009 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850 isoform X1 [Populus euphratica]
19 Hb_006449_060 0.3064299598 - - PREDICTED: uncharacterized protein LOC104106381 [Nicotiana tomentosiformis]
20 Hb_005337_010 0.3090956083 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710 [Vitis vinifera]

Gene co-expression network

sample Hb_051731_010 Hb_051731_010 Hb_086993_010 Hb_086993_010 Hb_051731_010--Hb_086993_010 Hb_133191_010 Hb_133191_010 Hb_051731_010--Hb_133191_010 Hb_014988_030 Hb_014988_030 Hb_051731_010--Hb_014988_030 Hb_001706_030 Hb_001706_030 Hb_051731_010--Hb_001706_030 Hb_000832_340 Hb_000832_340 Hb_051731_010--Hb_000832_340 Hb_004048_030 Hb_004048_030 Hb_051731_010--Hb_004048_030 Hb_086993_010--Hb_014988_030 Hb_086993_010--Hb_133191_010 Hb_000915_190 Hb_000915_190 Hb_086993_010--Hb_000915_190 Hb_086993_010--Hb_001706_030 Hb_012253_020 Hb_012253_020 Hb_086993_010--Hb_012253_020 Hb_133191_010--Hb_014988_030 Hb_133191_010--Hb_012253_020 Hb_002090_010 Hb_002090_010 Hb_133191_010--Hb_002090_010 Hb_002123_030 Hb_002123_030 Hb_133191_010--Hb_002123_030 Hb_014988_030--Hb_012253_020 Hb_014988_030--Hb_002123_030 Hb_014988_030--Hb_002090_010 Hb_000419_100 Hb_000419_100 Hb_001706_030--Hb_000419_100 Hb_001899_020 Hb_001899_020 Hb_001706_030--Hb_001899_020 Hb_176819_010 Hb_176819_010 Hb_001706_030--Hb_176819_010 Hb_005656_130 Hb_005656_130 Hb_001706_030--Hb_005656_130 Hb_005207_010 Hb_005207_010 Hb_000832_340--Hb_005207_010 Hb_002233_050 Hb_002233_050 Hb_000832_340--Hb_002233_050 Hb_003159_070 Hb_003159_070 Hb_000832_340--Hb_003159_070 Hb_029510_080 Hb_029510_080 Hb_000832_340--Hb_029510_080 Hb_003057_030 Hb_003057_030 Hb_000832_340--Hb_003057_030 Hb_177772_010 Hb_177772_010 Hb_000832_340--Hb_177772_010 Hb_069512_010 Hb_069512_010 Hb_004048_030--Hb_069512_010 Hb_002043_100 Hb_002043_100 Hb_004048_030--Hb_002043_100 Hb_001421_040 Hb_001421_040 Hb_004048_030--Hb_001421_040 Hb_166230_010 Hb_166230_010 Hb_004048_030--Hb_166230_010 Hb_007504_030 Hb_007504_030 Hb_004048_030--Hb_007504_030 Hb_001231_010 Hb_001231_010 Hb_004048_030--Hb_001231_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0742997 0 0 0.041659
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.024147 0.118301

CAGE analysis