Hb_001706_030

Information

Type -
Description -
Location Contig1706: 39444-40211
Sequence    

Annotation

kegg
ID vvi:104880364
description uncharacterized LOC104880364
nr
ID XP_010655074.1
description PREDICTED: uncharacterized protein LOC104880364 [Vitis vinifera]
swissprot
ID -
description -
trembl
ID A5BF87
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_042091 PE=4 SV=1
Gene Ontology
ID GO:0005488
description PREDICTED: uncharacterized protein LOC104880364

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15943: 26108-38593
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001706_030 0.0 - - PREDICTED: uncharacterized protein LOC104880364 [Vitis vinifera]
2 Hb_000419_100 0.1245638243 - - -
3 Hb_001899_020 0.2317525694 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 [Jatropha curcas]
4 Hb_051731_010 0.2424309123 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
5 Hb_086993_010 0.2756514946 - - -
6 Hb_176819_010 0.2793972951 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
7 Hb_005656_130 0.2841222522 - - PREDICTED: calmodulin-like protein 7 [Jatropha curcas]
8 Hb_126395_010 0.2896718538 - - hypothetical protein VITISV_043980 [Vitis vinifera]
9 Hb_010171_010 0.2909787563 - - hypothetical protein VITISV_033646 [Vitis vinifera]
10 Hb_001257_150 0.3070593198 - - -
11 Hb_004048_030 0.3094771753 - - hypothetical protein B456_009G371200, partial [Gossypium raimondii]
12 Hb_014988_030 0.3298338654 - - hypothetical protein VITISV_006810 [Vitis vinifera]
13 Hb_002072_050 0.3302880928 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
14 Hb_096077_010 0.3349515598 - - Desacetoxyvindoline 4-hydroxylase, putative [Ricinus communis]
15 Hb_005399_050 0.3396995329 - - DNA-directed RNA polymerase subunit beta [Glycine soja]
16 Hb_001338_160 0.3397397357 - - NADH dehydrogenase subunit 5 [Hevea brasiliensis]
17 Hb_166230_010 0.3404522554 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
18 Hb_007237_100 0.3426058783 - - DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
19 Hb_004143_030 0.3429028999 - - PREDICTED: chromosome-associated kinesin KIF4B [Jatropha curcas]
20 Hb_133191_010 0.3436502917 - - hypothetical protein JCGZ_15340 [Jatropha curcas]

Gene co-expression network

sample Hb_001706_030 Hb_001706_030 Hb_000419_100 Hb_000419_100 Hb_001706_030--Hb_000419_100 Hb_001899_020 Hb_001899_020 Hb_001706_030--Hb_001899_020 Hb_051731_010 Hb_051731_010 Hb_001706_030--Hb_051731_010 Hb_086993_010 Hb_086993_010 Hb_001706_030--Hb_086993_010 Hb_176819_010 Hb_176819_010 Hb_001706_030--Hb_176819_010 Hb_005656_130 Hb_005656_130 Hb_001706_030--Hb_005656_130 Hb_000419_100--Hb_001899_020 Hb_002072_050 Hb_002072_050 Hb_000419_100--Hb_002072_050 Hb_010171_010 Hb_010171_010 Hb_000419_100--Hb_010171_010 Hb_115031_010 Hb_115031_010 Hb_000419_100--Hb_115031_010 Hb_000419_100--Hb_051731_010 Hb_001899_020--Hb_176819_010 Hb_065395_020 Hb_065395_020 Hb_001899_020--Hb_065395_020 Hb_001902_170 Hb_001902_170 Hb_001899_020--Hb_001902_170 Hb_098068_010 Hb_098068_010 Hb_001899_020--Hb_098068_010 Hb_051731_010--Hb_086993_010 Hb_133191_010 Hb_133191_010 Hb_051731_010--Hb_133191_010 Hb_014988_030 Hb_014988_030 Hb_051731_010--Hb_014988_030 Hb_000832_340 Hb_000832_340 Hb_051731_010--Hb_000832_340 Hb_004048_030 Hb_004048_030 Hb_051731_010--Hb_004048_030 Hb_086993_010--Hb_014988_030 Hb_086993_010--Hb_133191_010 Hb_000915_190 Hb_000915_190 Hb_086993_010--Hb_000915_190 Hb_012253_020 Hb_012253_020 Hb_086993_010--Hb_012253_020 Hb_004981_010 Hb_004981_010 Hb_176819_010--Hb_004981_010 Hb_176819_010--Hb_065395_020 Hb_176819_010--Hb_000419_100 Hb_002224_050 Hb_002224_050 Hb_176819_010--Hb_002224_050 Hb_003388_070 Hb_003388_070 Hb_005656_130--Hb_003388_070 Hb_001231_010 Hb_001231_010 Hb_005656_130--Hb_001231_010 Hb_003371_050 Hb_003371_050 Hb_005656_130--Hb_003371_050 Hb_005656_130--Hb_010171_010 Hb_000086_540 Hb_000086_540 Hb_005656_130--Hb_000086_540 Hb_166230_010 Hb_166230_010 Hb_005656_130--Hb_166230_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0480594 0 0 0.0547714
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.112011

CAGE analysis