Hb_086993_010

Information

Type -
Description -
Location Contig86993: 212-916
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_086993_010 0.0 - - -
2 Hb_014988_030 0.0777889785 - - hypothetical protein VITISV_006810 [Vitis vinifera]
3 Hb_133191_010 0.0922399347 - - hypothetical protein JCGZ_15340 [Jatropha curcas]
4 Hb_051731_010 0.1857745508 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
5 Hb_000915_190 0.272813716 - - -
6 Hb_001706_030 0.2756514946 - - PREDICTED: uncharacterized protein LOC104880364 [Vitis vinifera]
7 Hb_012253_020 0.2798689615 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_002072_050 0.28750499 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
9 Hb_153665_010 0.2963350657 - - PREDICTED: uncharacterized protein LOC104245945 [Nicotiana sylvestris]
10 Hb_002090_010 0.2994121837 - - gag-pol fusion protein [Rhizophagus irregularis DAOM 197198w]
11 Hb_002123_030 0.3010359747 - - hypothetical protein VITISV_003767 [Vitis vinifera]
12 Hb_000419_100 0.3036986639 - - -
13 Hb_004041_010 0.3054294536 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000832_340 0.3070727624 - - PREDICTED: psbP-like protein 2, chloroplastic isoform X3 [Nelumbo nucifera]
15 Hb_000599_070 0.309082234 - - PREDICTED: patellin-4-like [Jatropha curcas]
16 Hb_009042_010 0.3189427794 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
17 Hb_188450_010 0.3194098548 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
18 Hb_000072_040 0.321035512 - - -
19 Hb_108557_010 0.3218141857 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like [Jatropha curcas]
20 Hb_030370_010 0.3220558209 - - PREDICTED: uncharacterized protein LOC104896222 [Beta vulgaris subsp. vulgaris]

Gene co-expression network

sample Hb_086993_010 Hb_086993_010 Hb_014988_030 Hb_014988_030 Hb_086993_010--Hb_014988_030 Hb_133191_010 Hb_133191_010 Hb_086993_010--Hb_133191_010 Hb_051731_010 Hb_051731_010 Hb_086993_010--Hb_051731_010 Hb_000915_190 Hb_000915_190 Hb_086993_010--Hb_000915_190 Hb_001706_030 Hb_001706_030 Hb_086993_010--Hb_001706_030 Hb_012253_020 Hb_012253_020 Hb_086993_010--Hb_012253_020 Hb_014988_030--Hb_133191_010 Hb_014988_030--Hb_012253_020 Hb_014988_030--Hb_051731_010 Hb_002123_030 Hb_002123_030 Hb_014988_030--Hb_002123_030 Hb_002090_010 Hb_002090_010 Hb_014988_030--Hb_002090_010 Hb_133191_010--Hb_051731_010 Hb_133191_010--Hb_012253_020 Hb_133191_010--Hb_002090_010 Hb_133191_010--Hb_002123_030 Hb_051731_010--Hb_001706_030 Hb_000832_340 Hb_000832_340 Hb_051731_010--Hb_000832_340 Hb_004048_030 Hb_004048_030 Hb_051731_010--Hb_004048_030 Hb_001814_060 Hb_001814_060 Hb_000915_190--Hb_001814_060 Hb_010171_010 Hb_010171_010 Hb_000915_190--Hb_010171_010 Hb_007793_030 Hb_007793_030 Hb_000915_190--Hb_007793_030 Hb_001054_010 Hb_001054_010 Hb_000915_190--Hb_001054_010 Hb_000659_090 Hb_000659_090 Hb_000915_190--Hb_000659_090 Hb_006237_030 Hb_006237_030 Hb_000915_190--Hb_006237_030 Hb_000419_100 Hb_000419_100 Hb_001706_030--Hb_000419_100 Hb_001899_020 Hb_001899_020 Hb_001706_030--Hb_001899_020 Hb_176819_010 Hb_176819_010 Hb_001706_030--Hb_176819_010 Hb_005656_130 Hb_005656_130 Hb_001706_030--Hb_005656_130 Hb_012253_020--Hb_002123_030 Hb_153665_010 Hb_153665_010 Hb_012253_020--Hb_153665_010 Hb_030370_010 Hb_030370_010 Hb_012253_020--Hb_030370_010 Hb_000599_070 Hb_000599_070 Hb_012253_020--Hb_000599_070 Hb_009042_010 Hb_009042_010 Hb_012253_020--Hb_009042_010 Hb_188450_010 Hb_188450_010 Hb_012253_020--Hb_188450_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.136566 0 0 0.283025
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.129782 0.438025

CAGE analysis