Hb_000419_100

Information

Type -
Description -
Location Contig419: 123125-124188
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000419_100 0.0 - - -
2 Hb_001706_030 0.1245638243 - - PREDICTED: uncharacterized protein LOC104880364 [Vitis vinifera]
3 Hb_001899_020 0.2127361734 - - PREDICTED: phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2 [Jatropha curcas]
4 Hb_002072_050 0.2428403684 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
5 Hb_010171_010 0.2560620097 - - hypothetical protein VITISV_033646 [Vitis vinifera]
6 Hb_115031_010 0.2650403033 - - photosystem II P680 chlorophyll A apoprotein, partial (chloroplast) [Oenothera grandiflora]
7 Hb_051731_010 0.2720790255 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]
8 Hb_161017_020 0.2835549254 - - hypothetical protein EUTSA_v10012231mg, partial [Eutrema salsugineum]
9 Hb_007237_100 0.2839110941 - - DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
10 Hb_005399_050 0.2856054706 - - DNA-directed RNA polymerase subunit beta [Glycine soja]
11 Hb_001338_090 0.2856482855 - - hypothetical protein VITISV_009275 [Vitis vinifera]
12 Hb_106692_020 0.2857770722 - - NADH dehydrogenase subunit F, partial (chloroplast) [Hevea sp. Gillespie 4272]
13 Hb_001338_160 0.289146077 - - NADH dehydrogenase subunit 5 [Hevea brasiliensis]
14 Hb_171554_060 0.2918049368 - - PREDICTED: uncharacterized protein LOC102627687 [Citrus sinensis]
15 Hb_047623_010 0.2918165014 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
16 Hb_002417_040 0.2918342569 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
17 Hb_139518_020 0.2918505352 - - multidrug resistance pump, putative [Ricinus communis]
18 Hb_024128_010 0.2918924488 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
19 Hb_019299_040 0.2918976211 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
20 Hb_007111_020 0.2919708102 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]

Gene co-expression network

sample Hb_000419_100 Hb_000419_100 Hb_001706_030 Hb_001706_030 Hb_000419_100--Hb_001706_030 Hb_001899_020 Hb_001899_020 Hb_000419_100--Hb_001899_020 Hb_002072_050 Hb_002072_050 Hb_000419_100--Hb_002072_050 Hb_010171_010 Hb_010171_010 Hb_000419_100--Hb_010171_010 Hb_115031_010 Hb_115031_010 Hb_000419_100--Hb_115031_010 Hb_051731_010 Hb_051731_010 Hb_000419_100--Hb_051731_010 Hb_001706_030--Hb_001899_020 Hb_001706_030--Hb_051731_010 Hb_086993_010 Hb_086993_010 Hb_001706_030--Hb_086993_010 Hb_176819_010 Hb_176819_010 Hb_001706_030--Hb_176819_010 Hb_005656_130 Hb_005656_130 Hb_001706_030--Hb_005656_130 Hb_001899_020--Hb_176819_010 Hb_065395_020 Hb_065395_020 Hb_001899_020--Hb_065395_020 Hb_001902_170 Hb_001902_170 Hb_001899_020--Hb_001902_170 Hb_098068_010 Hb_098068_010 Hb_001899_020--Hb_098068_010 Hb_000418_160 Hb_000418_160 Hb_002072_050--Hb_000418_160 Hb_023547_010 Hb_023547_010 Hb_002072_050--Hb_023547_010 Hb_005352_010 Hb_005352_010 Hb_002072_050--Hb_005352_010 Hb_022599_010 Hb_022599_010 Hb_002072_050--Hb_022599_010 Hb_004762_020 Hb_004762_020 Hb_002072_050--Hb_004762_020 Hb_123951_010 Hb_123951_010 Hb_002072_050--Hb_123951_010 Hb_000275_100 Hb_000275_100 Hb_010171_010--Hb_000275_100 Hb_011649_040 Hb_011649_040 Hb_010171_010--Hb_011649_040 Hb_145745_020 Hb_145745_020 Hb_010171_010--Hb_145745_020 Hb_000483_320 Hb_000483_320 Hb_010171_010--Hb_000483_320 Hb_007237_100 Hb_007237_100 Hb_010171_010--Hb_007237_100 Hb_000915_190 Hb_000915_190 Hb_010171_010--Hb_000915_190 Hb_000648_150 Hb_000648_150 Hb_115031_010--Hb_000648_150 Hb_106692_020 Hb_106692_020 Hb_115031_010--Hb_106692_020 Hb_001674_050 Hb_001674_050 Hb_115031_010--Hb_001674_050 Hb_182972_020 Hb_182972_020 Hb_115031_010--Hb_182972_020 Hb_001645_020 Hb_001645_020 Hb_115031_010--Hb_001645_020 Hb_141708_010 Hb_141708_010 Hb_115031_010--Hb_141708_010 Hb_051731_010--Hb_086993_010 Hb_133191_010 Hb_133191_010 Hb_051731_010--Hb_133191_010 Hb_014988_030 Hb_014988_030 Hb_051731_010--Hb_014988_030 Hb_000832_340 Hb_000832_340 Hb_051731_010--Hb_000832_340 Hb_004048_030 Hb_004048_030 Hb_051731_010--Hb_004048_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.0494544 0 0 0.0539461
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.205262

CAGE analysis