Hb_007044_280

Information

Type -
Description -
Location Contig7044: 234307-235351
Sequence    

Annotation

kegg
ID rcu:RCOM_1727240
description hypothetical protein
nr
ID XP_011021218.1
description PREDICTED: uncharacterized protein LOC105123357 [Populus euphratica]
swissprot
ID -
description -
trembl
ID B9RSM4
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1727240 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_55047: 231689-233607 , PASA_asmbl_55050: 234676-235471
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007044_280 0.0 - - PREDICTED: uncharacterized protein LOC105123357 [Populus euphratica]
2 Hb_018591_040 0.0142628906 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
3 Hb_006995_020 0.0896545453 - - hypothetical protein glysoja_017339 [Glycine soja]
4 Hb_007659_010 0.1277440987 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Jatropha curcas]
5 Hb_002224_050 0.2023182144 - - PREDICTED: uncharacterized protein LOC104764484 isoform X1 [Camelina sativa]
6 Hb_041476_010 0.2430948886 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
7 Hb_004041_010 0.2535238485 - - conserved hypothetical protein [Ricinus communis]
8 Hb_041813_070 0.2831891138 - - -
9 Hb_005241_020 0.2879756474 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
10 Hb_001377_440 0.3045342763 - - -
11 Hb_000541_010 0.3129828752 - - polyprotein [Citrus endogenous pararetrovirus]
12 Hb_003245_010 0.31667894 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
13 Hb_165958_010 0.3169984879 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_001969_050 0.3181658797 - - PREDICTED: uncharacterized protein LOC105634920 isoform X1 [Jatropha curcas]
15 Hb_001723_050 0.3220125064 - - galactinol synthase-2 [Manihot esculenta]
16 Hb_001519_230 0.3243571061 - - PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
17 Hb_095399_010 0.3340770968 - - cytochrome b/f complex subunit IV [Sphagnum fimbriatum]
18 Hb_007595_060 0.336639049 - - conserved hypothetical protein [Ricinus communis]
19 Hb_004947_070 0.3401237074 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
20 Hb_117252_010 0.3501258105 - - hypothetical protein [Pseudomonas tolaasii]

Gene co-expression network

sample Hb_007044_280 Hb_007044_280 Hb_018591_040 Hb_018591_040 Hb_007044_280--Hb_018591_040 Hb_006995_020 Hb_006995_020 Hb_007044_280--Hb_006995_020 Hb_007659_010 Hb_007659_010 Hb_007044_280--Hb_007659_010 Hb_002224_050 Hb_002224_050 Hb_007044_280--Hb_002224_050 Hb_041476_010 Hb_041476_010 Hb_007044_280--Hb_041476_010 Hb_004041_010 Hb_004041_010 Hb_007044_280--Hb_004041_010 Hb_018591_040--Hb_006995_020 Hb_018591_040--Hb_007659_010 Hb_018591_040--Hb_002224_050 Hb_018591_040--Hb_041476_010 Hb_018591_040--Hb_004041_010 Hb_006995_020--Hb_007659_010 Hb_001377_440 Hb_001377_440 Hb_006995_020--Hb_001377_440 Hb_041813_070 Hb_041813_070 Hb_006995_020--Hb_041813_070 Hb_001969_050 Hb_001969_050 Hb_006995_020--Hb_001969_050 Hb_007659_010--Hb_002224_050 Hb_007659_010--Hb_041476_010 Hb_000541_010 Hb_000541_010 Hb_007659_010--Hb_000541_010 Hb_003245_010 Hb_003245_010 Hb_007659_010--Hb_003245_010 Hb_002224_050--Hb_041476_010 Hb_002224_050--Hb_000541_010 Hb_002224_050--Hb_003245_010 Hb_165958_010 Hb_165958_010 Hb_002224_050--Hb_165958_010 Hb_117252_010 Hb_117252_010 Hb_002224_050--Hb_117252_010 Hb_041476_010--Hb_000541_010 Hb_041476_010--Hb_003245_010 Hb_041476_010--Hb_165958_010 Hb_041476_010--Hb_117252_010 Hb_012253_020 Hb_012253_020 Hb_004041_010--Hb_012253_020 Hb_004041_010--Hb_007659_010 Hb_004041_010--Hb_002224_050 Hb_028751_010 Hb_028751_010 Hb_004041_010--Hb_028751_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.966768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.450416

CAGE analysis