Hb_007765_120

Information

Type -
Description -
Location Contig7765: 103259-118123
Sequence    

Annotation

kegg
ID rcu:RCOM_0730590
description glycogen phosphorylase, putative (EC:2.4.1.1)
nr
ID XP_002520435.1
description glycogen phosphorylase, putative [Ricinus communis]
swissprot
ID P32811
description Alpha-glucan phosphorylase, H isozyme OS=Solanum tuberosum PE=1 SV=1
trembl
ID B9S366
description Alpha-1,4 glucan phosphorylase OS=Ricinus communis GN=RCOM_0730590 PE=3 SV=1
Gene Ontology
ID GO:0005829
description alpha-glucan h isozyme

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007765_120 0.0 - - glycogen phosphorylase, putative [Ricinus communis]
2 Hb_005199_010 0.2160742722 - - conserved hypothetical protein [Ricinus communis]
3 Hb_007290_080 0.2303751824 - - hypothetical protein CISIN_1g047098mg [Citrus sinensis]
4 Hb_002713_080 0.2329569823 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
5 Hb_148909_020 0.2449639592 - - PREDICTED: glutamyl-tRNA(Gln) amidotransferase subunit C, chloroplastic/mitochondrial [Jatropha curcas]
6 Hb_015978_070 0.2503392494 - - -
7 Hb_000184_100 0.2524473407 - - IMP dehydrogenase/GMP reductase [Hevea brasiliensis]
8 Hb_009384_020 0.2531130734 - - hypothetical protein JCGZ_24168 [Jatropha curcas]
9 Hb_011224_040 0.2557699407 - - PREDICTED: ER membrane protein complex subunit 8/9 homolog [Jatropha curcas]
10 Hb_101430_010 0.2566345772 - - -
11 Hb_000134_020 0.2568032433 - - thioredoxin-like family protein [Hevea brasiliensis]
12 Hb_015401_010 0.2610016677 - - hypothetical protein VITISV_001548 [Vitis vinifera]
13 Hb_000645_190 0.2611361505 - - PREDICTED: 60S ribosomal protein L29-1-like [Glycine max]
14 Hb_000367_170 0.2616177133 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
15 Hb_056768_010 0.2633910817 - - PREDICTED: serine/threonine-protein kinase HT1 isoform X1 [Cicer arietinum]
16 Hb_029888_020 0.2656678911 - - hypothetical protein PHAVU_007G268100g [Phaseolus vulgaris]
17 Hb_000159_070 0.2657327966 - - JHL03K20.4 [Jatropha curcas]
18 Hb_078604_010 0.2662184767 - - -
19 Hb_065866_010 0.2665797387 - - PREDICTED: hydroxyacyl-thioester dehydratase type 2, mitochondrial [Fragaria vesca subsp. vesca]
20 Hb_000002_420 0.2676976424 - - PREDICTED: serine/threonine-protein kinase BLUS1-like [Citrus sinensis]

Gene co-expression network

sample Hb_007765_120 Hb_007765_120 Hb_005199_010 Hb_005199_010 Hb_007765_120--Hb_005199_010 Hb_007290_080 Hb_007290_080 Hb_007765_120--Hb_007290_080 Hb_002713_080 Hb_002713_080 Hb_007765_120--Hb_002713_080 Hb_148909_020 Hb_148909_020 Hb_007765_120--Hb_148909_020 Hb_015978_070 Hb_015978_070 Hb_007765_120--Hb_015978_070 Hb_000184_100 Hb_000184_100 Hb_007765_120--Hb_000184_100 Hb_109578_010 Hb_109578_010 Hb_005199_010--Hb_109578_010 Hb_000275_010 Hb_000275_010 Hb_005199_010--Hb_000275_010 Hb_001405_130 Hb_001405_130 Hb_005199_010--Hb_001405_130 Hb_004048_010 Hb_004048_010 Hb_005199_010--Hb_004048_010 Hb_000345_430 Hb_000345_430 Hb_005199_010--Hb_000345_430 Hb_001571_090 Hb_001571_090 Hb_007290_080--Hb_001571_090 Hb_010815_030 Hb_010815_030 Hb_007290_080--Hb_010815_030 Hb_000329_020 Hb_000329_020 Hb_007290_080--Hb_000329_020 Hb_009384_020 Hb_009384_020 Hb_007290_080--Hb_009384_020 Hb_007290_080--Hb_148909_020 Hb_009711_020 Hb_009711_020 Hb_007290_080--Hb_009711_020 Hb_002713_080--Hb_009384_020 Hb_000676_160 Hb_000676_160 Hb_002713_080--Hb_000676_160 Hb_000046_560 Hb_000046_560 Hb_002713_080--Hb_000046_560 Hb_000160_180 Hb_000160_180 Hb_002713_080--Hb_000160_180 Hb_004871_040 Hb_004871_040 Hb_002713_080--Hb_004871_040 Hb_003053_010 Hb_003053_010 Hb_002713_080--Hb_003053_010 Hb_000483_250 Hb_000483_250 Hb_148909_020--Hb_000483_250 Hb_000159_070 Hb_000159_070 Hb_148909_020--Hb_000159_070 Hb_008887_040 Hb_008887_040 Hb_148909_020--Hb_008887_040 Hb_060618_010 Hb_060618_010 Hb_148909_020--Hb_060618_010 Hb_000172_420 Hb_000172_420 Hb_148909_020--Hb_000172_420 Hb_000367_170 Hb_000367_170 Hb_015978_070--Hb_000367_170 Hb_001575_030 Hb_001575_030 Hb_015978_070--Hb_001575_030 Hb_015978_070--Hb_000345_430 Hb_001610_130 Hb_001610_130 Hb_015978_070--Hb_001610_130 Hb_012305_120 Hb_012305_120 Hb_015978_070--Hb_012305_120 Hb_000419_130 Hb_000419_130 Hb_015978_070--Hb_000419_130 Hb_023711_010 Hb_023711_010 Hb_000184_100--Hb_023711_010 Hb_001789_130 Hb_001789_130 Hb_000184_100--Hb_001789_130 Hb_004800_120 Hb_004800_120 Hb_000184_100--Hb_004800_120 Hb_004976_070 Hb_004976_070 Hb_000184_100--Hb_004976_070 Hb_000347_330 Hb_000347_330 Hb_000184_100--Hb_000347_330 Hb_000184_100--Hb_007290_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0270687 0.028979 0.0725282 0.0144651 0.0338677 0.200107
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.291631 0.458977 0 0.0239606 0.0772337

CAGE analysis