Hb_002713_080

Information

Type -
Description -
Location Contig2713: 111295-112229
Sequence    

Annotation

kegg
ID rcu:RCOM_1116940
description glycine-rich RNA-binding protein, putative
nr
ID XP_002525321.1
description glycine-rich RNA-binding protein, putative [Ricinus communis]
swissprot
ID Q9LIS2
description Glycine-rich RNA-binding protein 4, mitochondrial OS=Arabidopsis thaliana GN=RBG4 PE=2 SV=1
trembl
ID B9SH52
description Glycine-rich RNA-binding protein, putative OS=Ricinus communis GN=RCOM_1116940 PE=4 SV=1
Gene Ontology
ID GO:0000166
description glycine-rich rna-binding protein mitochondrial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_28428: 111292-111822
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002713_080 0.0 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
2 Hb_009384_020 0.1291324331 - - hypothetical protein JCGZ_24168 [Jatropha curcas]
3 Hb_000676_160 0.1303092188 - - folate carrier protein, putative [Ricinus communis]
4 Hb_000046_560 0.1423986543 - - PREDICTED: uncharacterized protein LOC105118519 [Populus euphratica]
5 Hb_000160_180 0.1454111447 - - methionyl-tRNA formyltransferase, putative [Ricinus communis]
6 Hb_004871_040 0.1454305501 - - PREDICTED: tRNA (guanine-N(7)-)-methyltransferase [Jatropha curcas]
7 Hb_003053_010 0.1459794787 - - PREDICTED: uncharacterized protein LOC105641481 isoform X2 [Jatropha curcas]
8 Hb_007290_080 0.1466192662 - - hypothetical protein CISIN_1g047098mg [Citrus sinensis]
9 Hb_001158_230 0.1509809624 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM8 [Jatropha curcas]
10 Hb_002798_020 0.1545123344 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
11 Hb_019516_100 0.154795956 - - 40S ribosomal protein S14, putative [Ricinus communis]
12 Hb_174865_010 0.1552790872 - - transcription initiation factor iia (tfiia), gamma chain, putative [Ricinus communis]
13 Hb_001780_040 0.1560457816 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
14 Hb_004052_020 0.1562588451 - - Mitochondrial import receptor subunit TOM5 [Theobroma cacao]
15 Hb_000159_070 0.1565339378 - - JHL03K20.4 [Jatropha curcas]
16 Hb_000331_640 0.1571151982 transcription factor TF Family: TAZ protein binding protein, putative [Ricinus communis]
17 Hb_003058_080 0.157462238 - - Chaperonin 10 isoform 1 [Theobroma cacao]
18 Hb_003683_110 0.1577719438 - - JHL10I11.3 [Jatropha curcas]
19 Hb_101430_010 0.1581192989 - - -
20 Hb_076693_040 0.1595070244 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]

Gene co-expression network

sample Hb_002713_080 Hb_002713_080 Hb_009384_020 Hb_009384_020 Hb_002713_080--Hb_009384_020 Hb_000676_160 Hb_000676_160 Hb_002713_080--Hb_000676_160 Hb_000046_560 Hb_000046_560 Hb_002713_080--Hb_000046_560 Hb_000160_180 Hb_000160_180 Hb_002713_080--Hb_000160_180 Hb_004871_040 Hb_004871_040 Hb_002713_080--Hb_004871_040 Hb_003053_010 Hb_003053_010 Hb_002713_080--Hb_003053_010 Hb_019516_100 Hb_019516_100 Hb_009384_020--Hb_019516_100 Hb_000159_070 Hb_000159_070 Hb_009384_020--Hb_000159_070 Hb_007944_040 Hb_007944_040 Hb_009384_020--Hb_007944_040 Hb_001158_230 Hb_001158_230 Hb_009384_020--Hb_001158_230 Hb_012753_230 Hb_012753_230 Hb_009384_020--Hb_012753_230 Hb_000042_260 Hb_000042_260 Hb_009384_020--Hb_000042_260 Hb_174865_010 Hb_174865_010 Hb_000676_160--Hb_174865_010 Hb_000735_040 Hb_000735_040 Hb_000676_160--Hb_000735_040 Hb_002798_020 Hb_002798_020 Hb_000676_160--Hb_002798_020 Hb_007065_010 Hb_007065_010 Hb_000676_160--Hb_007065_010 Hb_086639_090 Hb_086639_090 Hb_000676_160--Hb_086639_090 Hb_007120_090 Hb_007120_090 Hb_000676_160--Hb_007120_090 Hb_006925_040 Hb_006925_040 Hb_000046_560--Hb_006925_040 Hb_002783_270 Hb_002783_270 Hb_000046_560--Hb_002783_270 Hb_003683_110 Hb_003683_110 Hb_000046_560--Hb_003683_110 Hb_000996_140 Hb_000996_140 Hb_000046_560--Hb_000996_140 Hb_007044_130 Hb_007044_130 Hb_000046_560--Hb_007044_130 Hb_004157_030 Hb_004157_030 Hb_000046_560--Hb_004157_030 Hb_131181_010 Hb_131181_010 Hb_000160_180--Hb_131181_010 Hb_002540_080 Hb_002540_080 Hb_000160_180--Hb_002540_080 Hb_001318_260 Hb_001318_260 Hb_000160_180--Hb_001318_260 Hb_018133_020 Hb_018133_020 Hb_000160_180--Hb_018133_020 Hb_001279_080 Hb_001279_080 Hb_000160_180--Hb_001279_080 Hb_026053_020 Hb_026053_020 Hb_000160_180--Hb_026053_020 Hb_001117_090 Hb_001117_090 Hb_004871_040--Hb_001117_090 Hb_004871_040--Hb_002798_020 Hb_009421_040 Hb_009421_040 Hb_004871_040--Hb_009421_040 Hb_004800_120 Hb_004800_120 Hb_004871_040--Hb_004800_120 Hb_003581_100 Hb_003581_100 Hb_004871_040--Hb_003581_100 Hb_087749_010 Hb_087749_010 Hb_004871_040--Hb_087749_010 Hb_003053_010--Hb_006925_040 Hb_001141_140 Hb_001141_140 Hb_003053_010--Hb_001141_140 Hb_003185_110 Hb_003185_110 Hb_003053_010--Hb_003185_110 Hb_000025_620 Hb_000025_620 Hb_003053_010--Hb_000025_620 Hb_000297_230 Hb_000297_230 Hb_003053_010--Hb_000297_230 Hb_001780_040 Hb_001780_040 Hb_003053_010--Hb_001780_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.45883 0.40251 3.02297 0.894885 1.49799 2.53108
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.82656 9.14925 1.04731 1.46055 2.31893

CAGE analysis