Hb_002636_020

Information

Type -
Description -
Location Contig2636: 51544-53181
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_27501: 51659-53115 , PASA_asmbl_27502: 51931-52080 , PASA_asmbl_27503: 52218-52529 , PASA_asmbl_27504: 52855-53159 , PASA_asmbl_27505: 53491-54185
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002636_020 0.0 - - -
2 Hb_000738_010 0.2426217378 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
3 Hb_000395_060 0.2521199138 - - -
4 Hb_175572_010 0.2619488405 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_187024_070 0.2680756321 - - PREDICTED: uncharacterized protein LOC105785446 [Gossypium raimondii]
6 Hb_000107_640 0.2756427124 - - conserved hypothetical protein [Ricinus communis]
7 Hb_005408_040 0.2900638423 - - -
8 Hb_000434_020 0.2998219052 - - PREDICTED: protein yippee-like At5g53940 [Jatropha curcas]
9 Hb_000003_770 0.3148576657 - - -
10 Hb_001379_130 0.3156014508 - - PREDICTED: pre-mRNA-processing protein 40A isoform X2 [Jatropha curcas]
11 Hb_148262_020 0.3184415912 - - -
12 Hb_035935_010 0.32032996 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
13 Hb_001163_090 0.3206012358 - - hypothetical protein POPTR_0009s14920g [Populus trichocarpa]
14 Hb_001257_020 0.3208858687 - - -
15 Hb_002811_340 0.3230369933 - - PREDICTED: ammonium transporter 3 member 2-like [Populus euphratica]
16 Hb_003116_020 0.3273540756 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
17 Hb_000067_020 0.3302550796 desease resistance Gene Name: NB-ARC PREDICTED: inactive disease resistance protein RPS4-like [Jatropha curcas]
18 Hb_065866_010 0.3316580039 - - PREDICTED: hydroxyacyl-thioester dehydratase type 2, mitochondrial [Fragaria vesca subsp. vesca]
19 Hb_001520_020 0.3326263619 - - PREDICTED: metal tolerance protein C2 [Jatropha curcas]
20 Hb_000011_340 0.3329351792 - - PREDICTED: protein LURP-one-related 11-like [Jatropha curcas]

Gene co-expression network

sample Hb_002636_020 Hb_002636_020 Hb_000738_010 Hb_000738_010 Hb_002636_020--Hb_000738_010 Hb_000395_060 Hb_000395_060 Hb_002636_020--Hb_000395_060 Hb_175572_010 Hb_175572_010 Hb_002636_020--Hb_175572_010 Hb_187024_070 Hb_187024_070 Hb_002636_020--Hb_187024_070 Hb_000107_640 Hb_000107_640 Hb_002636_020--Hb_000107_640 Hb_005408_040 Hb_005408_040 Hb_002636_020--Hb_005408_040 Hb_000738_010--Hb_187024_070 Hb_012324_020 Hb_012324_020 Hb_000738_010--Hb_012324_020 Hb_094721_010 Hb_094721_010 Hb_000738_010--Hb_094721_010 Hb_000003_770 Hb_000003_770 Hb_000738_010--Hb_000003_770 Hb_001379_130 Hb_001379_130 Hb_000738_010--Hb_001379_130 Hb_000395_060--Hb_005408_040 Hb_000395_060--Hb_000107_640 Hb_000395_060--Hb_175572_010 Hb_001959_300 Hb_001959_300 Hb_000395_060--Hb_001959_300 Hb_009954_050 Hb_009954_050 Hb_000395_060--Hb_009954_050 Hb_005009_020 Hb_005009_020 Hb_000395_060--Hb_005009_020 Hb_003116_020 Hb_003116_020 Hb_175572_010--Hb_003116_020 Hb_175572_010--Hb_000107_640 Hb_007761_050 Hb_007761_050 Hb_175572_010--Hb_007761_050 Hb_001257_020 Hb_001257_020 Hb_175572_010--Hb_001257_020 Hb_088496_010 Hb_088496_010 Hb_175572_010--Hb_088496_010 Hb_000046_200 Hb_000046_200 Hb_187024_070--Hb_000046_200 Hb_187024_070--Hb_001379_130 Hb_187024_070--Hb_012324_020 Hb_187024_070--Hb_094721_010 Hb_187024_070--Hb_000003_770 Hb_000107_640--Hb_003116_020 Hb_000107_640--Hb_005408_040 Hb_005063_070 Hb_005063_070 Hb_000107_640--Hb_005063_070 Hb_000107_640--Hb_005009_020 Hb_005408_040--Hb_012324_020 Hb_005408_040--Hb_094721_010 Hb_005408_040--Hb_000003_770 Hb_005408_040--Hb_001379_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 1.54915
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
7.11916 4.34958 0 1.32135 1.55081

CAGE analysis