Hb_007904_010

Information

Type -
Description -
Location Contig7904: 2993-4123
Sequence    

Annotation

kegg
ID vvi:104877935
description uncharacterized LOC104877935
nr
ID XP_009778385.1
description PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID A0A0B0NGV1
description ATP-dependent zinc metalloprotease FtsH OS=Gossypium arboreum GN=F383_19049 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007904_010 0.0 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
2 Hb_005822_030 0.1704531861 - - -
3 Hb_000018_050 0.2495321926 - - PREDICTED: uncharacterized protein LOC104899363 [Beta vulgaris subsp. vulgaris]
4 Hb_085438_010 0.2854263905 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
5 Hb_002431_070 0.2854264508 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA11 [Jatropha curcas]
6 Hb_004730_030 0.2854267785 - - synaptonemal complex protein, putative [Ricinus communis]
7 Hb_000676_210 0.2854466035 - - Cytochrome P450 superfamily protein [Theobroma cacao]
8 Hb_003207_140 0.2854500846 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
9 Hb_108331_010 0.2854655498 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
10 Hb_004337_010 0.2854990799 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_002223_010 0.2854994002 - - hypothetical protein VITISV_009489 [Vitis vinifera]
12 Hb_029793_020 0.2855086045 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_029154_020 0.2855114591 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_163434_010 0.285516658 - - hypothetical protein JCGZ_13470 [Jatropha curcas]
15 Hb_130470_010 0.285874219 - - hypothetical protein, partial [Pseudomonas tolaasii]
16 Hb_003226_270 0.2858985658 - - hypothetical protein POPTR_0014s12390g [Populus trichocarpa]
17 Hb_006995_030 0.2881199164 - - PREDICTED: uncharacterized protein LOC102663993 [Glycine max]
18 Hb_035484_010 0.298576542 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
19 Hb_001072_060 0.3104242748 - - PREDICTED: uncharacterized protein LOC105645525 [Jatropha curcas]
20 Hb_007924_040 0.3124041709 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]

Gene co-expression network

sample Hb_007904_010 Hb_007904_010 Hb_005822_030 Hb_005822_030 Hb_007904_010--Hb_005822_030 Hb_000018_050 Hb_000018_050 Hb_007904_010--Hb_000018_050 Hb_085438_010 Hb_085438_010 Hb_007904_010--Hb_085438_010 Hb_002431_070 Hb_002431_070 Hb_007904_010--Hb_002431_070 Hb_004730_030 Hb_004730_030 Hb_007904_010--Hb_004730_030 Hb_000676_210 Hb_000676_210 Hb_007904_010--Hb_000676_210 Hb_005822_030--Hb_000018_050 Hb_019617_010 Hb_019617_010 Hb_005822_030--Hb_019617_010 Hb_032634_010 Hb_032634_010 Hb_005822_030--Hb_032634_010 Hb_079902_030 Hb_079902_030 Hb_005822_030--Hb_079902_030 Hb_002042_240 Hb_002042_240 Hb_005822_030--Hb_002042_240 Hb_037790_010 Hb_037790_010 Hb_000018_050--Hb_037790_010 Hb_006212_030 Hb_006212_030 Hb_000018_050--Hb_006212_030 Hb_002374_130 Hb_002374_130 Hb_000018_050--Hb_002374_130 Hb_000018_050--Hb_019617_010 Hb_085438_010--Hb_002431_070 Hb_085438_010--Hb_004730_030 Hb_085438_010--Hb_000676_210 Hb_003207_140 Hb_003207_140 Hb_085438_010--Hb_003207_140 Hb_108331_010 Hb_108331_010 Hb_085438_010--Hb_108331_010 Hb_004337_010 Hb_004337_010 Hb_085438_010--Hb_004337_010 Hb_002431_070--Hb_004730_030 Hb_002431_070--Hb_000676_210 Hb_002431_070--Hb_003207_140 Hb_002431_070--Hb_108331_010 Hb_002431_070--Hb_004337_010 Hb_004730_030--Hb_000676_210 Hb_004730_030--Hb_003207_140 Hb_004730_030--Hb_108331_010 Hb_004730_030--Hb_004337_010 Hb_000676_210--Hb_003207_140 Hb_000676_210--Hb_004337_010 Hb_002223_010 Hb_002223_010 Hb_000676_210--Hb_002223_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0190596 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0342696 0 0 0.0706789

CAGE analysis