Hb_005822_030

Information

Type -
Description -
Location Contig5822: 39655-41801
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005822_030 0.0 - - -
2 Hb_007904_010 0.1704531861 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
3 Hb_000018_050 0.2827301502 - - PREDICTED: uncharacterized protein LOC104899363 [Beta vulgaris subsp. vulgaris]
4 Hb_019617_010 0.2889128671 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
5 Hb_032634_010 0.2900554558 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
6 Hb_079902_030 0.3564882706 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002042_240 0.3570845512 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
8 Hb_016354_010 0.3574290884 - - -
9 Hb_002850_030 0.3594708828 - - -
10 Hb_012235_010 0.3614780537 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
11 Hb_155720_010 0.3731523244 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
12 Hb_012807_090 0.3881587403 - - PREDICTED: uncharacterized protein LOC100267173 [Vitis vinifera]
13 Hb_004951_050 0.3910593941 - - conserved hypothetical protein [Ricinus communis]
14 Hb_014929_010 0.3925125108 - - -
15 Hb_173121_010 0.3928762361 - - -
16 Hb_001818_110 0.3948216195 - - -
17 Hb_000143_070 0.3957744385 - - -
18 Hb_000300_460 0.3985096757 - - Mavicyanin, putative [Ricinus communis]
19 Hb_003279_010 0.3998514 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
20 Hb_121954_010 0.3999647239 - - PREDICTED: uncharacterized protein LOC105774125 [Gossypium raimondii]

Gene co-expression network

sample Hb_005822_030 Hb_005822_030 Hb_007904_010 Hb_007904_010 Hb_005822_030--Hb_007904_010 Hb_000018_050 Hb_000018_050 Hb_005822_030--Hb_000018_050 Hb_019617_010 Hb_019617_010 Hb_005822_030--Hb_019617_010 Hb_032634_010 Hb_032634_010 Hb_005822_030--Hb_032634_010 Hb_079902_030 Hb_079902_030 Hb_005822_030--Hb_079902_030 Hb_002042_240 Hb_002042_240 Hb_005822_030--Hb_002042_240 Hb_007904_010--Hb_000018_050 Hb_085438_010 Hb_085438_010 Hb_007904_010--Hb_085438_010 Hb_002431_070 Hb_002431_070 Hb_007904_010--Hb_002431_070 Hb_004730_030 Hb_004730_030 Hb_007904_010--Hb_004730_030 Hb_000676_210 Hb_000676_210 Hb_007904_010--Hb_000676_210 Hb_037790_010 Hb_037790_010 Hb_000018_050--Hb_037790_010 Hb_006212_030 Hb_006212_030 Hb_000018_050--Hb_006212_030 Hb_002374_130 Hb_002374_130 Hb_000018_050--Hb_002374_130 Hb_000018_050--Hb_019617_010 Hb_155720_010 Hb_155720_010 Hb_019617_010--Hb_155720_010 Hb_019617_010--Hb_032634_010 Hb_003605_010 Hb_003605_010 Hb_019617_010--Hb_003605_010 Hb_173121_010 Hb_173121_010 Hb_019617_010--Hb_173121_010 Hb_032634_010--Hb_173121_010 Hb_081703_020 Hb_081703_020 Hb_032634_010--Hb_081703_020 Hb_003927_060 Hb_003927_060 Hb_032634_010--Hb_003927_060 Hb_000608_430 Hb_000608_430 Hb_032634_010--Hb_000608_430 Hb_016354_010 Hb_016354_010 Hb_079902_030--Hb_016354_010 Hb_079902_030--Hb_002042_240 Hb_012235_010 Hb_012235_010 Hb_079902_030--Hb_012235_010 Hb_002850_030 Hb_002850_030 Hb_079902_030--Hb_002850_030 Hb_012807_090 Hb_012807_090 Hb_079902_030--Hb_012807_090 Hb_004951_050 Hb_004951_050 Hb_079902_030--Hb_004951_050 Hb_002042_240--Hb_002850_030 Hb_002042_240--Hb_016354_010 Hb_002042_240--Hb_012235_010 Hb_002042_240--Hb_012807_090 Hb_002042_240--Hb_004951_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.119242 0 0 0 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0857249 0 0 0.164475

CAGE analysis