Hb_155720_010

Information

Type -
Description -
Location Contig155720: 22-825
Sequence    

Annotation

kegg
ID tcc:TCM_009243
description hypothetical protein
nr
ID XP_009625019.1
description PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
swissprot
ID -
description -
trembl
ID M1DF56
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400037635 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_155720_010 0.0 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
2 Hb_019617_010 0.2069775649 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_114988_010 0.2173446788 - - -
4 Hb_003605_010 0.3142413256 - - -
5 Hb_173121_010 0.3174243888 - - -
6 Hb_067730_010 0.3237448592 - - hypothetical protein OsJ_21419 [Oryza sativa Japonica Group]
7 Hb_003725_050 0.3357474145 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
8 Hb_000018_050 0.3469926804 - - PREDICTED: uncharacterized protein LOC104899363 [Beta vulgaris subsp. vulgaris]
9 Hb_032634_010 0.347814496 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
10 Hb_075722_010 0.3504669597 - - hypothetical protein JCGZ_01984 [Jatropha curcas]
11 Hb_000272_040 0.3570924159 - - -
12 Hb_000089_050 0.363281041 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_002860_020 0.3653977491 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_000098_090 0.3659936277 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
15 Hb_002652_010 0.3683134474 - - -
16 Hb_005822_030 0.3731523244 - - -
17 Hb_037790_010 0.3793160784 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
18 Hb_040290_010 0.3947974585 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
19 Hb_002520_010 0.3971956728 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
20 Hb_010589_140 0.3972268905 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Fragaria vesca subsp. vesca]

Gene co-expression network

sample Hb_155720_010 Hb_155720_010 Hb_019617_010 Hb_019617_010 Hb_155720_010--Hb_019617_010 Hb_114988_010 Hb_114988_010 Hb_155720_010--Hb_114988_010 Hb_003605_010 Hb_003605_010 Hb_155720_010--Hb_003605_010 Hb_173121_010 Hb_173121_010 Hb_155720_010--Hb_173121_010 Hb_067730_010 Hb_067730_010 Hb_155720_010--Hb_067730_010 Hb_003725_050 Hb_003725_050 Hb_155720_010--Hb_003725_050 Hb_032634_010 Hb_032634_010 Hb_019617_010--Hb_032634_010 Hb_005822_030 Hb_005822_030 Hb_019617_010--Hb_005822_030 Hb_019617_010--Hb_003605_010 Hb_019617_010--Hb_173121_010 Hb_000018_050 Hb_000018_050 Hb_019617_010--Hb_000018_050 Hb_012146_040 Hb_012146_040 Hb_114988_010--Hb_012146_040 Hb_040290_010 Hb_040290_010 Hb_114988_010--Hb_040290_010 Hb_004687_010 Hb_004687_010 Hb_114988_010--Hb_004687_010 Hb_011537_070 Hb_011537_070 Hb_114988_010--Hb_011537_070 Hb_114988_010--Hb_003725_050 Hb_003927_060 Hb_003927_060 Hb_003605_010--Hb_003927_060 Hb_003605_010--Hb_173121_010 Hb_003605_010--Hb_067730_010 Hb_002996_020 Hb_002996_020 Hb_003605_010--Hb_002996_020 Hb_111854_010 Hb_111854_010 Hb_003605_010--Hb_111854_010 Hb_173121_010--Hb_032634_010 Hb_002235_290 Hb_002235_290 Hb_173121_010--Hb_002235_290 Hb_173121_010--Hb_067730_010 Hb_001221_360 Hb_001221_360 Hb_067730_010--Hb_001221_360 Hb_009710_030 Hb_009710_030 Hb_067730_010--Hb_009710_030 Hb_011139_050 Hb_011139_050 Hb_067730_010--Hb_011139_050 Hb_002085_100 Hb_002085_100 Hb_067730_010--Hb_002085_100 Hb_006940_020 Hb_006940_020 Hb_067730_010--Hb_006940_020 Hb_007148_010 Hb_007148_010 Hb_003725_050--Hb_007148_010 Hb_176844_010 Hb_176844_010 Hb_003725_050--Hb_176844_010 Hb_010770_010 Hb_010770_010 Hb_003725_050--Hb_010770_010 Hb_006634_020 Hb_006634_020 Hb_003725_050--Hb_006634_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.137452 0.032679 0 0 0 0.0406874
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0584916 0 0.0237386 0.116516

CAGE analysis