Hb_007148_010

Information

Type -
Description -
Location Contig7148: 25368-30003
Sequence    

Annotation

kegg
ID mdm:103427080
description uncharacterized LOC103427080
nr
ID XP_008363369.1
description PREDICTED: uncharacterized protein LOC103427080 [Malus domestica]
swissprot
ID P04323
description Retrovirus-related Pol polyprotein from transposon 17.6 OS=Drosophila melanogaster GN=pol PE=3 SV=1
trembl
ID A5B5E9
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_025860 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC103427080

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007148_010 0.0 - - PREDICTED: uncharacterized protein LOC103427080 [Malus domestica]
2 Hb_033279_010 0.300889153 - - DNA/RNA polymerases superfamily protein, putative [Theobroma cacao]
3 Hb_000098_090 0.3026796338 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
4 Hb_003725_050 0.3029596562 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_002520_010 0.3114047816 - - PREDICTED: uncharacterized protein LOC105775392, partial [Gossypium raimondii]
6 Hb_126044_010 0.3872059314 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
7 Hb_015778_020 0.394773535 - - Putative methyltransferase family protein [Solanum demissum]
8 Hb_083663_010 0.398453208 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
9 Hb_010452_010 0.4163896474 - - PREDICTED: uncharacterized protein LOC104232369 [Nicotiana sylvestris]
10 Hb_002234_110 0.4185279873 - - PREDICTED: uncharacterized protein LOC103455142 [Malus domestica]
11 Hb_000085_030 0.4189930207 - - -
12 Hb_000840_170 0.4297864897 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
13 Hb_081703_020 0.4305024566 - - -
14 Hb_002045_280 0.4324460658 - - unnamed protein product [Vitis vinifera]
15 Hb_006634_020 0.4352726673 - - -
16 Hb_023226_100 0.4359916786 - - PREDICTED: uncharacterized protein LOC104903172 [Beta vulgaris subsp. vulgaris]
17 Hb_000140_430 0.4370223393 - - -
18 Hb_000283_120 0.4378456562 - - PREDICTED: uncharacterized protein LOC105647704 [Jatropha curcas]
19 Hb_002652_010 0.4388081777 - - -
20 Hb_000188_030 0.4407570598 - - carboxylic ester hydrolase, putative [Ricinus communis]

Gene co-expression network

sample Hb_007148_010 Hb_007148_010 Hb_033279_010 Hb_033279_010 Hb_007148_010--Hb_033279_010 Hb_000098_090 Hb_000098_090 Hb_007148_010--Hb_000098_090 Hb_003725_050 Hb_003725_050 Hb_007148_010--Hb_003725_050 Hb_002520_010 Hb_002520_010 Hb_007148_010--Hb_002520_010 Hb_126044_010 Hb_126044_010 Hb_007148_010--Hb_126044_010 Hb_015778_020 Hb_015778_020 Hb_007148_010--Hb_015778_020 Hb_033279_010--Hb_000098_090 Hb_012305_080 Hb_012305_080 Hb_033279_010--Hb_012305_080 Hb_009986_010 Hb_009986_010 Hb_033279_010--Hb_009986_010 Hb_005714_030 Hb_005714_030 Hb_033279_010--Hb_005714_030 Hb_008305_010 Hb_008305_010 Hb_033279_010--Hb_008305_010 Hb_001417_020 Hb_001417_020 Hb_000098_090--Hb_001417_020 Hb_000089_050 Hb_000089_050 Hb_000098_090--Hb_000089_050 Hb_000463_030 Hb_000463_030 Hb_000098_090--Hb_000463_030 Hb_075722_010 Hb_075722_010 Hb_000098_090--Hb_075722_010 Hb_176844_010 Hb_176844_010 Hb_003725_050--Hb_176844_010 Hb_010770_010 Hb_010770_010 Hb_003725_050--Hb_010770_010 Hb_114988_010 Hb_114988_010 Hb_003725_050--Hb_114988_010 Hb_006634_020 Hb_006634_020 Hb_003725_050--Hb_006634_020 Hb_155720_010 Hb_155720_010 Hb_003725_050--Hb_155720_010 Hb_083663_010 Hb_083663_010 Hb_002520_010--Hb_083663_010 Hb_002520_010--Hb_015778_020 Hb_010452_010 Hb_010452_010 Hb_002520_010--Hb_010452_010 Hb_000085_030 Hb_000085_030 Hb_002520_010--Hb_000085_030 Hb_000671_140 Hb_000671_140 Hb_002520_010--Hb_000671_140 Hb_000140_430 Hb_000140_430 Hb_002520_010--Hb_000140_430 Hb_007064_030 Hb_007064_030 Hb_126044_010--Hb_007064_030 Hb_057207_010 Hb_057207_010 Hb_126044_010--Hb_057207_010 Hb_071130_040 Hb_071130_040 Hb_126044_010--Hb_071130_040 Hb_124621_010 Hb_124621_010 Hb_126044_010--Hb_124621_010 Hb_001335_050 Hb_001335_050 Hb_126044_010--Hb_001335_050 Hb_006212_030 Hb_006212_030 Hb_126044_010--Hb_006212_030 Hb_015778_020--Hb_010452_010 Hb_015076_020 Hb_015076_020 Hb_015778_020--Hb_015076_020 Hb_015778_020--Hb_083663_010 Hb_000505_120 Hb_000505_120 Hb_015778_020--Hb_000505_120 Hb_056095_010 Hb_056095_010 Hb_015778_020--Hb_056095_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0211796 0.0172693 0 0 0 0.00456963
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0113279 0 0 0 0.0190923

CAGE analysis