Hb_005714_030

Information

Type -
Description -
Location Contig5714: 17638-20772
Sequence    

Annotation

kegg
ID cit:102615383
description COBRA-like protein 6-like
nr
ID XP_012463960.1
description PREDICTED: COBRA-like protein 6 isoform X1 [Gossypium raimondii]
swissprot
ID O04500
description COBRA-like protein 6 OS=Arabidopsis thaliana GN=COBL6 PE=2 SV=2
trembl
ID A0A0D2V8X8
description Gossypium raimondii chromosome 13, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_013G039400 PE=4 SV=1
Gene Ontology
ID GO:0031225
description cobra-like protein 6

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005714_030 0.0 - - PREDICTED: COBRA-like protein 6 isoform X1 [Gossypium raimondii]
2 Hb_000883_040 0.2093616373 - - -
3 Hb_007218_160 0.3007065056 - - PREDICTED: uncharacterized protein LOC105108358 [Populus euphratica]
4 Hb_002094_070 0.3102938083 - - Organic cation transporter, putative [Ricinus communis]
5 Hb_001065_070 0.3178597222 - - -
6 Hb_002316_040 0.3254543528 - - trehalose-6-phosphate synthase, putative [Ricinus communis]
7 Hb_001625_030 0.3261637987 - - hypothetical protein JCGZ_20707 [Jatropha curcas]
8 Hb_062785_010 0.3303783857 - - Organic cation transporter, putative [Ricinus communis]
9 Hb_177132_010 0.3317991774 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
10 Hb_000019_140 0.33187705 - - Light-regulated protein precursor, putative [Ricinus communis]
11 Hb_000016_120 0.3331600726 - - PREDICTED: uncharacterized protein LOC104610208 [Nelumbo nucifera]
12 Hb_002552_020 0.338178276 - - PREDICTED: 116 kDa U5 small nuclear ribonucleoprotein component-like [Jatropha curcas]
13 Hb_006132_020 0.3393165437 - - PREDICTED: U-box domain-containing protein 37-like isoform X1 [Populus euphratica]
14 Hb_009986_010 0.340237732 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_055314_010 0.3405915782 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
16 Hb_115435_010 0.3410485727 - - -
17 Hb_012812_010 0.343420653 - - putative leucine-rich repeat receptor-like serine/threonine-protein kinase [Morus notabilis]
18 Hb_001901_030 0.3442205568 - - -
19 Hb_001277_230 0.3450687467 - - -
20 Hb_133385_010 0.3462422357 - - -

Gene co-expression network

sample Hb_005714_030 Hb_005714_030 Hb_000883_040 Hb_000883_040 Hb_005714_030--Hb_000883_040 Hb_007218_160 Hb_007218_160 Hb_005714_030--Hb_007218_160 Hb_002094_070 Hb_002094_070 Hb_005714_030--Hb_002094_070 Hb_001065_070 Hb_001065_070 Hb_005714_030--Hb_001065_070 Hb_002316_040 Hb_002316_040 Hb_005714_030--Hb_002316_040 Hb_001625_030 Hb_001625_030 Hb_005714_030--Hb_001625_030 Hb_002234_190 Hb_002234_190 Hb_000883_040--Hb_002234_190 Hb_006132_020 Hb_006132_020 Hb_000883_040--Hb_006132_020 Hb_003398_070 Hb_003398_070 Hb_000883_040--Hb_003398_070 Hb_002233_020 Hb_002233_020 Hb_000883_040--Hb_002233_020 Hb_000002_270 Hb_000002_270 Hb_000883_040--Hb_000002_270 Hb_000684_050 Hb_000684_050 Hb_007218_160--Hb_000684_050 Hb_004837_150 Hb_004837_150 Hb_007218_160--Hb_004837_150 Hb_001123_150 Hb_001123_150 Hb_007218_160--Hb_001123_150 Hb_006816_480 Hb_006816_480 Hb_007218_160--Hb_006816_480 Hb_001230_030 Hb_001230_030 Hb_007218_160--Hb_001230_030 Hb_000331_510 Hb_000331_510 Hb_007218_160--Hb_000331_510 Hb_062785_010 Hb_062785_010 Hb_002094_070--Hb_062785_010 Hb_011724_030 Hb_011724_030 Hb_002094_070--Hb_011724_030 Hb_002217_520 Hb_002217_520 Hb_002094_070--Hb_002217_520 Hb_000307_120 Hb_000307_120 Hb_002094_070--Hb_000307_120 Hb_001117_120 Hb_001117_120 Hb_002094_070--Hb_001117_120 Hb_002094_070--Hb_007218_160 Hb_004976_070 Hb_004976_070 Hb_001065_070--Hb_004976_070 Hb_002248_030 Hb_002248_030 Hb_001065_070--Hb_002248_030 Hb_000866_240 Hb_000866_240 Hb_001065_070--Hb_000866_240 Hb_000676_140 Hb_000676_140 Hb_001065_070--Hb_000676_140 Hb_062226_140 Hb_062226_140 Hb_001065_070--Hb_062226_140 Hb_069150_010 Hb_069150_010 Hb_001065_070--Hb_069150_010 Hb_001860_010 Hb_001860_010 Hb_002316_040--Hb_001860_010 Hb_001059_020 Hb_001059_020 Hb_002316_040--Hb_001059_020 Hb_000186_210 Hb_000186_210 Hb_002316_040--Hb_000186_210 Hb_013818_040 Hb_013818_040 Hb_002316_040--Hb_013818_040 Hb_000272_120 Hb_000272_120 Hb_002316_040--Hb_000272_120 Hb_004732_010 Hb_004732_010 Hb_002316_040--Hb_004732_010 Hb_001821_130 Hb_001821_130 Hb_001625_030--Hb_001821_130 Hb_003090_260 Hb_003090_260 Hb_001625_030--Hb_003090_260 Hb_011671_410 Hb_011671_410 Hb_001625_030--Hb_011671_410 Hb_002157_080 Hb_002157_080 Hb_001625_030--Hb_002157_080 Hb_002542_110 Hb_002542_110 Hb_001625_030--Hb_002542_110 Hb_005725_210 Hb_005725_210 Hb_001625_030--Hb_005725_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0956456 0.0107467 0.0106666 0 0.0418179
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0657907 0.025879 0 0.0206729 0.0540355

CAGE analysis