Hb_033279_010

Information

Type -
Description -
Location Contig33279: 59699-64110
Sequence    

Annotation

kegg
ID tcc:TCM_044877
description DNA/RNA polymerases superfamily protein, putative
nr
ID XP_007010875.1
description DNA/RNA polymerases superfamily protein, putative [Theobroma cacao]
swissprot
ID P09523
description Enzymatic polyprotein OS=Figwort mosaic virus (strain DxS) GN=ORF V PE=3 SV=1
trembl
ID A0A061FQY7
description DNA/RNA polymerases superfamily protein, putative OS=Theobroma cacao GN=TCM_044877 PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_033279_010 0.0 - - DNA/RNA polymerases superfamily protein, putative [Theobroma cacao]
2 Hb_000098_090 0.295291277 - - PREDICTED: uncharacterized protein LOC105640313 [Jatropha curcas]
3 Hb_007148_010 0.300889153 - - PREDICTED: uncharacterized protein LOC103427080 [Malus domestica]
4 Hb_012305_080 0.3499482441 - - -
5 Hb_009986_010 0.3652554406 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_005714_030 0.3714300768 - - PREDICTED: COBRA-like protein 6 isoform X1 [Gossypium raimondii]
7 Hb_008305_010 0.376539132 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_000463_030 0.3770491457 - - -
9 Hb_033661_010 0.37758471 - - PREDICTED: uncharacterized protein LOC105852393, partial [Cicer arietinum]
10 Hb_000261_300 0.3815335388 - - -
11 Hb_001366_160 0.3854734251 - - -
12 Hb_001021_050 0.3892071064 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
13 Hb_023226_100 0.3917836677 - - PREDICTED: uncharacterized protein LOC104903172 [Beta vulgaris subsp. vulgaris]
14 Hb_177132_010 0.3926519818 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
15 Hb_007276_020 0.3928427314 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_080085_010 0.3929968699 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
17 Hb_000016_120 0.3941115601 - - PREDICTED: uncharacterized protein LOC104610208 [Nelumbo nucifera]
18 Hb_003494_040 0.3960755585 transcription factor TF Family: NAC PREDICTED: protein FEZ [Jatropha curcas]
19 Hb_062671_010 0.3963568466 - - PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]
20 Hb_093543_010 0.3975359209 - - PREDICTED: uncharacterized protein LOC105650298, partial [Jatropha curcas]

Gene co-expression network

sample Hb_033279_010 Hb_033279_010 Hb_000098_090 Hb_000098_090 Hb_033279_010--Hb_000098_090 Hb_007148_010 Hb_007148_010 Hb_033279_010--Hb_007148_010 Hb_012305_080 Hb_012305_080 Hb_033279_010--Hb_012305_080 Hb_009986_010 Hb_009986_010 Hb_033279_010--Hb_009986_010 Hb_005714_030 Hb_005714_030 Hb_033279_010--Hb_005714_030 Hb_008305_010 Hb_008305_010 Hb_033279_010--Hb_008305_010 Hb_001417_020 Hb_001417_020 Hb_000098_090--Hb_001417_020 Hb_000098_090--Hb_007148_010 Hb_000089_050 Hb_000089_050 Hb_000098_090--Hb_000089_050 Hb_000463_030 Hb_000463_030 Hb_000098_090--Hb_000463_030 Hb_075722_010 Hb_075722_010 Hb_000098_090--Hb_075722_010 Hb_003725_050 Hb_003725_050 Hb_007148_010--Hb_003725_050 Hb_002520_010 Hb_002520_010 Hb_007148_010--Hb_002520_010 Hb_126044_010 Hb_126044_010 Hb_007148_010--Hb_126044_010 Hb_015778_020 Hb_015778_020 Hb_007148_010--Hb_015778_020 Hb_023161_030 Hb_023161_030 Hb_012305_080--Hb_023161_030 Hb_004714_020 Hb_004714_020 Hb_012305_080--Hb_004714_020 Hb_150200_010 Hb_150200_010 Hb_012305_080--Hb_150200_010 Hb_001496_140 Hb_001496_140 Hb_012305_080--Hb_001496_140 Hb_002123_030 Hb_002123_030 Hb_012305_080--Hb_002123_030 Hb_012253_020 Hb_012253_020 Hb_012305_080--Hb_012253_020 Hb_002094_070 Hb_002094_070 Hb_009986_010--Hb_002094_070 Hb_062785_010 Hb_062785_010 Hb_009986_010--Hb_062785_010 Hb_007218_160 Hb_007218_160 Hb_009986_010--Hb_007218_160 Hb_001115_020 Hb_001115_020 Hb_009986_010--Hb_001115_020 Hb_000684_050 Hb_000684_050 Hb_009986_010--Hb_000684_050 Hb_000243_150 Hb_000243_150 Hb_009986_010--Hb_000243_150 Hb_000883_040 Hb_000883_040 Hb_005714_030--Hb_000883_040 Hb_005714_030--Hb_007218_160 Hb_005714_030--Hb_002094_070 Hb_001065_070 Hb_001065_070 Hb_005714_030--Hb_001065_070 Hb_002316_040 Hb_002316_040 Hb_005714_030--Hb_002316_040 Hb_001625_030 Hb_001625_030 Hb_005714_030--Hb_001625_030 Hb_000011_470 Hb_000011_470 Hb_008305_010--Hb_000011_470 Hb_013420_040 Hb_013420_040 Hb_008305_010--Hb_013420_040 Hb_121041_010 Hb_121041_010 Hb_008305_010--Hb_121041_010 Hb_000627_020 Hb_000627_020 Hb_008305_010--Hb_000627_020 Hb_158203_010 Hb_158203_010 Hb_008305_010--Hb_158203_010 Hb_183191_020 Hb_183191_020 Hb_008305_010--Hb_183191_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00518555 0.0127917 0 0 0 0.00949639
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0117499 0 0 0.00366364 0.0197935

CAGE analysis