Hb_003725_050

Information

Type -
Description -
Location Contig3725: 91072-95495
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID P0CT39
description Transposon Tf2-6 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-6 PE=3 SV=1
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0005488
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003725_050 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_007148_010 0.3029596562 - - PREDICTED: uncharacterized protein LOC103427080 [Malus domestica]
3 Hb_176844_010 0.3064668811 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
4 Hb_010770_010 0.3193974789 - - -
5 Hb_114988_010 0.3289761155 - - -
6 Hb_006634_020 0.3343570003 - - -
7 Hb_155720_010 0.3357474145 - - PREDICTED: uncharacterized protein LOC104115978 [Nicotiana tomentosiformis]
8 Hb_001396_170 0.3357672825 - - unnamed protein product [Vitis vinifera]
9 Hb_011537_070 0.3358751049 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
10 Hb_137543_010 0.3363704288 - - -
11 Hb_000815_140 0.3375710311 - - cytochrome P450, putative [Ricinus communis]
12 Hb_093245_010 0.3407809222 - - -
13 Hb_000139_200 0.3454862299 - - catalytic, putative [Ricinus communis]
14 Hb_021888_150 0.3519319415 - - -
15 Hb_062585_010 0.3540555972 - - hypothetical protein JCGZ_19532 [Jatropha curcas]
16 Hb_000574_150 0.3542761466 - - PREDICTED: protein SRG1-like [Jatropha curcas]
17 Hb_000028_160 0.3566220486 - - PREDICTED: vacuolar protein sorting-associated protein 20 homolog 2-like [Jatropha curcas]
18 Hb_002843_050 0.3591531579 - - scab resistance family protein [Populus trichocarpa]
19 Hb_000189_200 0.3604167381 - - hypothetical protein JCGZ_02242 [Jatropha curcas]
20 Hb_162286_020 0.3611474873 - - PREDICTED: uncharacterized protein LOC105642702 [Jatropha curcas]

Gene co-expression network

sample Hb_003725_050 Hb_003725_050 Hb_007148_010 Hb_007148_010 Hb_003725_050--Hb_007148_010 Hb_176844_010 Hb_176844_010 Hb_003725_050--Hb_176844_010 Hb_010770_010 Hb_010770_010 Hb_003725_050--Hb_010770_010 Hb_114988_010 Hb_114988_010 Hb_003725_050--Hb_114988_010 Hb_006634_020 Hb_006634_020 Hb_003725_050--Hb_006634_020 Hb_155720_010 Hb_155720_010 Hb_003725_050--Hb_155720_010 Hb_033279_010 Hb_033279_010 Hb_007148_010--Hb_033279_010 Hb_000098_090 Hb_000098_090 Hb_007148_010--Hb_000098_090 Hb_002520_010 Hb_002520_010 Hb_007148_010--Hb_002520_010 Hb_126044_010 Hb_126044_010 Hb_007148_010--Hb_126044_010 Hb_015778_020 Hb_015778_020 Hb_007148_010--Hb_015778_020 Hb_176844_010--Hb_010770_010 Hb_000815_140 Hb_000815_140 Hb_176844_010--Hb_000815_140 Hb_000046_410 Hb_000046_410 Hb_176844_010--Hb_000046_410 Hb_013877_020 Hb_013877_020 Hb_176844_010--Hb_013877_020 Hb_012384_050 Hb_012384_050 Hb_176844_010--Hb_012384_050 Hb_087221_010 Hb_087221_010 Hb_176844_010--Hb_087221_010 Hb_010770_010--Hb_012384_050 Hb_010770_010--Hb_087221_010 Hb_073212_010 Hb_073212_010 Hb_010770_010--Hb_073212_010 Hb_007382_040 Hb_007382_040 Hb_010770_010--Hb_007382_040 Hb_010770_010--Hb_000046_410 Hb_114988_010--Hb_155720_010 Hb_012146_040 Hb_012146_040 Hb_114988_010--Hb_012146_040 Hb_040290_010 Hb_040290_010 Hb_114988_010--Hb_040290_010 Hb_004687_010 Hb_004687_010 Hb_114988_010--Hb_004687_010 Hb_011537_070 Hb_011537_070 Hb_114988_010--Hb_011537_070 Hb_034350_020 Hb_034350_020 Hb_006634_020--Hb_034350_020 Hb_000707_060 Hb_000707_060 Hb_006634_020--Hb_000707_060 Hb_000227_250 Hb_000227_250 Hb_006634_020--Hb_000227_250 Hb_002374_280 Hb_002374_280 Hb_006634_020--Hb_002374_280 Hb_000218_030 Hb_000218_030 Hb_006634_020--Hb_000218_030 Hb_000003_340 Hb_000003_340 Hb_006634_020--Hb_000003_340 Hb_019617_010 Hb_019617_010 Hb_155720_010--Hb_019617_010 Hb_003605_010 Hb_003605_010 Hb_155720_010--Hb_003605_010 Hb_173121_010 Hb_173121_010 Hb_155720_010--Hb_173121_010 Hb_067730_010 Hb_067730_010 Hb_155720_010--Hb_067730_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.125097 0.0599983 0 0 0.00450756 0.0314478
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0204061 0.0160591 0 0.00635908 0.0344397

CAGE analysis