Hb_011537_070

Information

Type -
Description -
Location Contig11537: 69339-99199
Sequence    

Annotation

kegg
ID vvi:100248545
description G-type lectin S-receptor-like serine/threonine-protein kinase RLK1
nr
ID XP_002283186.2
description PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
swissprot
ID Q39202
description G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 OS=Arabidopsis thaliana GN=RLK1 PE=2 SV=2
trembl
ID A0A0E0KRU6
description Uncharacterized protein OS=Oryza punctata PE=4 SV=1
Gene Ontology
ID GO:0004672
description g-type lectin s-receptor-like serine threonine-protein kinase rlk1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_04655: 68404-68908 , PASA_asmbl_04656: 72055-72368 , PASA_asmbl_04658: 76031-76354
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011537_070 0.0 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RLK1 [Vitis vinifera]
2 Hb_000364_070 0.2312739481 transcription factor TF Family: AP2 PREDICTED: floral homeotic protein APETALA 2 isoform X1 [Jatropha curcas]
3 Hb_000445_300 0.2416390721 - - PREDICTED: wall-associated receptor kinase 5-like [Eucalyptus grandis]
4 Hb_176368_010 0.2420793854 - - hypothetical protein POPTR_0019s00300g [Populus trichocarpa]
5 Hb_000003_390 0.2430857009 - - hypothetical protein POPTR_0003s20040g [Populus trichocarpa]
6 Hb_002735_040 0.2472042628 - - PREDICTED: wall-associated receptor kinase-like 22 [Jatropha curcas]
7 Hb_059464_010 0.2473501866 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000317_060 0.2476332303 - - PREDICTED: uncharacterized protein LOC105647051 [Jatropha curcas]
9 Hb_006634_020 0.2514233554 - - -
10 Hb_000840_170 0.2581866667 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
11 Hb_000815_140 0.2604068325 - - cytochrome P450, putative [Ricinus communis]
12 Hb_000640_150 0.2626799902 transcription factor TF Family: WRKY conserved hypothetical protein [Ricinus communis]
13 Hb_012528_030 0.2640135835 - - -
14 Hb_005348_070 0.2697965698 - - conserved hypothetical protein [Ricinus communis]
15 Hb_004136_040 0.270375748 - - putative protein kinase [Arabidopsis thaliana]
16 Hb_105085_010 0.2719954917 - - hypothetical protein JCGZ_05865 [Jatropha curcas]
17 Hb_176844_010 0.2722705281 - - UDP-glucuronosyltransferase, putative [Ricinus communis]
18 Hb_002173_020 0.2778928461 - - PREDICTED: uncharacterized protein LOC105801078 [Gossypium raimondii]
19 Hb_001504_190 0.2804474408 - - double-stranded RNA binding protein, putative [Ricinus communis]
20 Hb_000036_050 0.2809786324 - - PREDICTED: protein STRUBBELIG-RECEPTOR FAMILY 6-like [Camelina sativa]

Gene co-expression network

sample Hb_011537_070 Hb_011537_070 Hb_000364_070 Hb_000364_070 Hb_011537_070--Hb_000364_070 Hb_000445_300 Hb_000445_300 Hb_011537_070--Hb_000445_300 Hb_176368_010 Hb_176368_010 Hb_011537_070--Hb_176368_010 Hb_000003_390 Hb_000003_390 Hb_011537_070--Hb_000003_390 Hb_002735_040 Hb_002735_040 Hb_011537_070--Hb_002735_040 Hb_059464_010 Hb_059464_010 Hb_011537_070--Hb_059464_010 Hb_116125_010 Hb_116125_010 Hb_000364_070--Hb_116125_010 Hb_000364_070--Hb_002735_040 Hb_000270_210 Hb_000270_210 Hb_000364_070--Hb_000270_210 Hb_000984_250 Hb_000984_250 Hb_000364_070--Hb_000984_250 Hb_001952_130 Hb_001952_130 Hb_000364_070--Hb_001952_130 Hb_039894_010 Hb_039894_010 Hb_000445_300--Hb_039894_010 Hb_000445_300--Hb_176368_010 Hb_001529_060 Hb_001529_060 Hb_000445_300--Hb_001529_060 Hb_000504_090 Hb_000504_090 Hb_000445_300--Hb_000504_090 Hb_001009_290 Hb_001009_290 Hb_000445_300--Hb_001009_290 Hb_001522_010 Hb_001522_010 Hb_000445_300--Hb_001522_010 Hb_000859_050 Hb_000859_050 Hb_176368_010--Hb_000859_050 Hb_008103_080 Hb_008103_080 Hb_176368_010--Hb_008103_080 Hb_000327_080 Hb_000327_080 Hb_176368_010--Hb_000327_080 Hb_003739_030 Hb_003739_030 Hb_176368_010--Hb_003739_030 Hb_000922_140 Hb_000922_140 Hb_176368_010--Hb_000922_140 Hb_007257_050 Hb_007257_050 Hb_000003_390--Hb_007257_050 Hb_003157_010 Hb_003157_010 Hb_000003_390--Hb_003157_010 Hb_000997_410 Hb_000997_410 Hb_000003_390--Hb_000997_410 Hb_000375_370 Hb_000375_370 Hb_000003_390--Hb_000375_370 Hb_009028_030 Hb_009028_030 Hb_000003_390--Hb_009028_030 Hb_006501_020 Hb_006501_020 Hb_000003_390--Hb_006501_020 Hb_105085_010 Hb_105085_010 Hb_002735_040--Hb_105085_010 Hb_002804_050 Hb_002804_050 Hb_002735_040--Hb_002804_050 Hb_006615_100 Hb_006615_100 Hb_002735_040--Hb_006615_100 Hb_002843_050 Hb_002843_050 Hb_002735_040--Hb_002843_050 Hb_005122_060 Hb_005122_060 Hb_002735_040--Hb_005122_060 Hb_012384_050 Hb_012384_050 Hb_002735_040--Hb_012384_050 Hb_135611_010 Hb_135611_010 Hb_059464_010--Hb_135611_010 Hb_000317_060 Hb_000317_060 Hb_059464_010--Hb_000317_060 Hb_000172_540 Hb_000172_540 Hb_059464_010--Hb_000172_540 Hb_000139_230 Hb_000139_230 Hb_059464_010--Hb_000139_230 Hb_004545_170 Hb_004545_170 Hb_059464_010--Hb_004545_170 Hb_000640_100 Hb_000640_100 Hb_059464_010--Hb_000640_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.03807 1.10044 0.213548 0.10072 0.416145 0.439215
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.120755 0.0395994 0.0229615 0.888912 0.529796

CAGE analysis