Hb_000608_430

Information

Type transcription factor
Description TF Family: M-type
Location Contig608: 278768-279316
Sequence    

Annotation

kegg
ID rcu:RCOM_1077600
description mads box protein, putative
nr
ID XP_002514809.1
description mads box protein, putative [Ricinus communis]
swissprot
ID Q7X9H9
description Agamous-like MADS-box protein AGL93 OS=Arabidopsis thaliana GN=AGL93 PE=2 SV=1
trembl
ID B9RM40
description Mads box protein, putative OS=Ricinus communis GN=RCOM_1077600 PE=4 SV=1
Gene Ontology
ID GO:0005634
description mads box

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000608_430 0.0 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
2 Hb_004125_120 0.1870405924 - - protein phosphatase 2c, putative [Ricinus communis]
3 Hb_019837_020 0.2118714116 - - -
4 Hb_114271_010 0.2439837728 - - hypothetical protein JCGZ_19461 [Jatropha curcas]
5 Hb_142663_020 0.2633116361 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]
6 Hb_032260_110 0.2712213763 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000116_070 0.2741608641 transcription factor TF Family: C2H2 hypothetical protein JCGZ_22381 [Jatropha curcas]
8 Hb_010583_030 0.284618478 - - hypothetical protein PHAVU_011G114500g, partial [Phaseolus vulgaris]
9 Hb_032733_020 0.2872872172 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g36180-like isoform X4 [Citrus sinensis]
10 Hb_000574_040 0.2873177222 - - PREDICTED: triphosphate tunel metalloenzyme 3-like isoform X1 [Jatropha curcas]
11 Hb_004357_060 0.2916555306 - - PREDICTED: uncharacterized protein At4g22758 [Jatropha curcas]
12 Hb_004108_190 0.2932732186 - - PREDICTED: protein catecholamines up-like [Jatropha curcas]
13 Hb_004954_020 0.2964346548 - - PREDICTED: probable pectinesterase/pectinesterase inhibitor 51 isoform X2 [Jatropha curcas]
14 Hb_172632_130 0.2978618548 - - hypothetical protein JCGZ_22584 [Jatropha curcas]
15 Hb_001148_060 0.2980995343 - - hypothetical protein JCGZ_00278 [Jatropha curcas]
16 Hb_001728_110 0.2983277669 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF039-like [Jatropha curcas]
17 Hb_003177_050 0.303814362 - - PREDICTED: cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG1-like [Populus euphratica]
18 Hb_002498_300 0.3048206926 - - BnaC04g50140D [Brassica napus]
19 Hb_000834_060 0.3077329198 - - PREDICTED: probable chlorophyll(ide) b reductase NYC1, chloroplastic isoform X1 [Jatropha curcas]
20 Hb_010098_060 0.3084427378 - - PREDICTED: BTB/POZ domain-containing protein At5g17580 [Jatropha curcas]

Gene co-expression network

sample Hb_000608_430 Hb_000608_430 Hb_004125_120 Hb_004125_120 Hb_000608_430--Hb_004125_120 Hb_019837_020 Hb_019837_020 Hb_000608_430--Hb_019837_020 Hb_114271_010 Hb_114271_010 Hb_000608_430--Hb_114271_010 Hb_142663_020 Hb_142663_020 Hb_000608_430--Hb_142663_020 Hb_032260_110 Hb_032260_110 Hb_000608_430--Hb_032260_110 Hb_000116_070 Hb_000116_070 Hb_000608_430--Hb_000116_070 Hb_004125_120--Hb_019837_020 Hb_000330_030 Hb_000330_030 Hb_004125_120--Hb_000330_030 Hb_002759_100 Hb_002759_100 Hb_004125_120--Hb_002759_100 Hb_000205_230 Hb_000205_230 Hb_004125_120--Hb_000205_230 Hb_000856_130 Hb_000856_130 Hb_004125_120--Hb_000856_130 Hb_019837_020--Hb_000205_230 Hb_001148_060 Hb_001148_060 Hb_019837_020--Hb_001148_060 Hb_005183_040 Hb_005183_040 Hb_019837_020--Hb_005183_040 Hb_010098_060 Hb_010098_060 Hb_019837_020--Hb_010098_060 Hb_114271_010--Hb_032260_110 Hb_032733_020 Hb_032733_020 Hb_114271_010--Hb_032733_020 Hb_004108_190 Hb_004108_190 Hb_114271_010--Hb_004108_190 Hb_129420_010 Hb_129420_010 Hb_114271_010--Hb_129420_010 Hb_013420_060 Hb_013420_060 Hb_114271_010--Hb_013420_060 Hb_002005_050 Hb_002005_050 Hb_114271_010--Hb_002005_050 Hb_000834_060 Hb_000834_060 Hb_142663_020--Hb_000834_060 Hb_000684_200 Hb_000684_200 Hb_142663_020--Hb_000684_200 Hb_002811_250 Hb_002811_250 Hb_142663_020--Hb_002811_250 Hb_010557_010 Hb_010557_010 Hb_142663_020--Hb_010557_010 Hb_005181_120 Hb_005181_120 Hb_142663_020--Hb_005181_120 Hb_003177_050 Hb_003177_050 Hb_142663_020--Hb_003177_050 Hb_001497_040 Hb_001497_040 Hb_032260_110--Hb_001497_040 Hb_000215_230 Hb_000215_230 Hb_032260_110--Hb_000215_230 Hb_003786_010 Hb_003786_010 Hb_032260_110--Hb_003786_010 Hb_002798_080 Hb_002798_080 Hb_032260_110--Hb_002798_080 Hb_004208_010 Hb_004208_010 Hb_032260_110--Hb_004208_010 Hb_002253_090 Hb_002253_090 Hb_000116_070--Hb_002253_090 Hb_002540_050 Hb_002540_050 Hb_000116_070--Hb_002540_050 Hb_000272_040 Hb_000272_040 Hb_000116_070--Hb_000272_040 Hb_001411_040 Hb_001411_040 Hb_000116_070--Hb_001411_040 Hb_004088_050 Hb_004088_050 Hb_000116_070--Hb_004088_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.148787 0.0510438 0.154231 0.109976 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0908233 0 0.0374657 0.346146

CAGE analysis