Hb_002253_090

Information

Type -
Description -
Location Contig2253: 149173-150230
Sequence    

Annotation

kegg
ID rcu:RCOM_1461650
description Chitinase 1 precursor, putative
nr
ID XP_002517257.1
description Chitinase 1 precursor, putative [Ricinus communis]
swissprot
ID Q7M443
description Chitinase 2 OS=Tulipa bakeri PE=1 SV=1
trembl
ID B9RU38
description Chitinase 1, putative OS=Ricinus communis GN=RCOM_1461650 PE=3 SV=1
Gene Ontology
ID GO:0004553
description chitinase 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002253_090 0.0 - - Chitinase 1 precursor, putative [Ricinus communis]
2 Hb_000116_070 0.2056779107 transcription factor TF Family: C2H2 hypothetical protein JCGZ_22381 [Jatropha curcas]
3 Hb_000347_050 0.2366942207 - - PREDICTED: ABC transporter B family member 3-like [Jatropha curcas]
4 Hb_000272_040 0.2812252318 - - -
5 Hb_141881_010 0.2859363878 - - cytochrome P450, putative [Ricinus communis]
6 Hb_000107_180 0.288376018 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103343662 [Prunus mume]
7 Hb_001411_040 0.292261179 - - hypothetical protein VITISV_010644 [Vitis vinifera]
8 Hb_000237_210 0.3133274372 - - conserved hypothetical protein [Ricinus communis]
9 Hb_016567_010 0.3285174551 - - -
10 Hb_000608_430 0.3321117655 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
11 Hb_012098_090 0.3466402241 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
12 Hb_001405_140 0.3487277871 - - hypothetical protein POPTR_0004s08350g, partial [Populus trichocarpa]
13 Hb_173121_010 0.3509637034 - - -
14 Hb_000018_050 0.3532278394 - - PREDICTED: uncharacterized protein LOC104899363 [Beta vulgaris subsp. vulgaris]
15 Hb_001579_210 0.3548075288 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003994_310 0.358251717 transcription factor TF Family: PHD conserved hypothetical protein [Ricinus communis]
17 Hb_003940_050 0.3626215628 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
18 Hb_024468_030 0.3627628237 desease resistance Gene Name: DUF3388 putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
19 Hb_004088_050 0.363174094 - - hypothetical protein VITISV_027174 [Vitis vinifera]
20 Hb_122273_010 0.3654211399 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_002253_090 Hb_002253_090 Hb_000116_070 Hb_000116_070 Hb_002253_090--Hb_000116_070 Hb_000347_050 Hb_000347_050 Hb_002253_090--Hb_000347_050 Hb_000272_040 Hb_000272_040 Hb_002253_090--Hb_000272_040 Hb_141881_010 Hb_141881_010 Hb_002253_090--Hb_141881_010 Hb_000107_180 Hb_000107_180 Hb_002253_090--Hb_000107_180 Hb_001411_040 Hb_001411_040 Hb_002253_090--Hb_001411_040 Hb_002540_050 Hb_002540_050 Hb_000116_070--Hb_002540_050 Hb_000608_430 Hb_000608_430 Hb_000116_070--Hb_000608_430 Hb_000116_070--Hb_000272_040 Hb_000116_070--Hb_001411_040 Hb_004088_050 Hb_004088_050 Hb_000116_070--Hb_004088_050 Hb_000347_050--Hb_000116_070 Hb_173121_010 Hb_173121_010 Hb_000347_050--Hb_173121_010 Hb_000018_050 Hb_000018_050 Hb_000347_050--Hb_000018_050 Hb_004143_030 Hb_004143_030 Hb_000347_050--Hb_004143_030 Hb_000049_220 Hb_000049_220 Hb_000347_050--Hb_000049_220 Hb_011139_050 Hb_011139_050 Hb_000272_040--Hb_011139_050 Hb_122273_010 Hb_122273_010 Hb_000272_040--Hb_122273_010 Hb_004125_120 Hb_004125_120 Hb_000272_040--Hb_004125_120 Hb_016567_010 Hb_016567_010 Hb_000272_040--Hb_016567_010 Hb_012098_090 Hb_012098_090 Hb_141881_010--Hb_012098_090 Hb_141881_010--Hb_000107_180 Hb_000529_200 Hb_000529_200 Hb_141881_010--Hb_000529_200 Hb_141881_010--Hb_016567_010 Hb_141881_010--Hb_000272_040 Hb_000094_030 Hb_000094_030 Hb_000107_180--Hb_000094_030 Hb_004917_030 Hb_004917_030 Hb_000107_180--Hb_004917_030 Hb_001405_140 Hb_001405_140 Hb_000107_180--Hb_001405_140 Hb_000099_140 Hb_000099_140 Hb_000107_180--Hb_000099_140 Hb_000107_180--Hb_004088_050 Hb_001755_030 Hb_001755_030 Hb_001411_040--Hb_001755_030 Hb_000402_100 Hb_000402_100 Hb_001411_040--Hb_000402_100 Hb_001411_040--Hb_001405_140 Hb_000879_230 Hb_000879_230 Hb_001411_040--Hb_000879_230 Hb_001294_030 Hb_001294_030 Hb_001411_040--Hb_001294_030 Hb_007632_170 Hb_007632_170 Hb_001411_040--Hb_007632_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0506607 0 0.0380337 0.0225423 0 0.0291236
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0457168 0 0 0.0927386

CAGE analysis