Hb_000529_200

Information

Type -
Description -
Location Contig529: 274417-277471
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_47248: 274465-277428
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000529_200 0.0 - - -
2 Hb_012506_060 0.1943091367 - - hypothetical protein CICLE_v10029628mg [Citrus clementina]
3 Hb_000162_120 0.2017811431 - - PREDICTED: chaperone protein dnaJ 11, chloroplastic-like [Jatropha curcas]
4 Hb_007416_050 0.2096623461 transcription factor TF Family: Orphans PREDICTED: histidine kinase 5 [Jatropha curcas]
5 Hb_029866_120 0.2117619938 - - hypothetical protein CICLE_v10006070mg [Citrus clementina]
6 Hb_001427_030 0.2130171382 - - conserved hypothetical protein [Ricinus communis]
7 Hb_010812_040 0.2203248064 transcription factor TF Family: SNF2 PREDICTED: E3 ubiquitin-protein ligase SHPRH [Jatropha curcas]
8 Hb_001513_010 0.2231798419 - - conserved hypothetical protein [Ricinus communis]
9 Hb_011214_050 0.2238415931 - - phytoene synthase 2 [Manihot esculenta]
10 Hb_000016_130 0.2272653952 - - PREDICTED: molybdenum cofactor sulfurase [Jatropha curcas]
11 Hb_001811_160 0.2276325354 - - PREDICTED: probable glycosyltransferase At5g03795 [Eucalyptus grandis]
12 Hb_003666_030 0.2276682957 - - Thiol:disulfide interchange protein txlA, putative [Ricinus communis]
13 Hb_002163_040 0.2280658564 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000130_260 0.2349930914 rubber biosynthesis Gene Name: Dimethyallyltransferase PREDICTED: tRNA dimethylallyltransferase 9 isoform X1 [Jatropha curcas]
15 Hb_000679_050 0.236070821 - - Alba DNA/RNA-binding protein [Theobroma cacao]
16 Hb_000702_080 0.2371831061 - - PREDICTED: uncharacterized protein LOC105630492 [Jatropha curcas]
17 Hb_000173_250 0.2373978101 - - PREDICTED: ribonucleoside-diphosphate reductase small chain A [Jatropha curcas]
18 Hb_019053_060 0.2377034357 - - PREDICTED: uncharacterized protein LOC105632672 [Jatropha curcas]
19 Hb_002171_030 0.2394812353 - - plastid acyl-ACP thioesterase [Vernicia fordii]
20 Hb_000462_090 0.2395869754 - - PREDICTED: carotene epsilon-monooxygenase, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_000529_200 Hb_000529_200 Hb_012506_060 Hb_012506_060 Hb_000529_200--Hb_012506_060 Hb_000162_120 Hb_000162_120 Hb_000529_200--Hb_000162_120 Hb_007416_050 Hb_007416_050 Hb_000529_200--Hb_007416_050 Hb_029866_120 Hb_029866_120 Hb_000529_200--Hb_029866_120 Hb_001427_030 Hb_001427_030 Hb_000529_200--Hb_001427_030 Hb_010812_040 Hb_010812_040 Hb_000529_200--Hb_010812_040 Hb_069662_010 Hb_069662_010 Hb_012506_060--Hb_069662_010 Hb_000228_060 Hb_000228_060 Hb_012506_060--Hb_000228_060 Hb_000122_070 Hb_000122_070 Hb_012506_060--Hb_000122_070 Hb_004531_140 Hb_004531_140 Hb_012506_060--Hb_004531_140 Hb_018272_020 Hb_018272_020 Hb_012506_060--Hb_018272_020 Hb_001769_170 Hb_001769_170 Hb_012506_060--Hb_001769_170 Hb_000627_260 Hb_000627_260 Hb_000162_120--Hb_000627_260 Hb_000191_080 Hb_000191_080 Hb_000162_120--Hb_000191_080 Hb_009767_130 Hb_009767_130 Hb_000162_120--Hb_009767_130 Hb_003813_020 Hb_003813_020 Hb_000162_120--Hb_003813_020 Hb_001898_180 Hb_001898_180 Hb_000162_120--Hb_001898_180 Hb_019040_030 Hb_019040_030 Hb_000162_120--Hb_019040_030 Hb_009252_060 Hb_009252_060 Hb_007416_050--Hb_009252_060 Hb_000390_090 Hb_000390_090 Hb_007416_050--Hb_000390_090 Hb_019053_060 Hb_019053_060 Hb_007416_050--Hb_019053_060 Hb_007416_050--Hb_029866_120 Hb_001369_610 Hb_001369_610 Hb_007416_050--Hb_001369_610 Hb_000877_080 Hb_000877_080 Hb_007416_050--Hb_000877_080 Hb_001195_460 Hb_001195_460 Hb_029866_120--Hb_001195_460 Hb_000487_260 Hb_000487_260 Hb_029866_120--Hb_000487_260 Hb_013405_020 Hb_013405_020 Hb_029866_120--Hb_013405_020 Hb_003077_020 Hb_003077_020 Hb_029866_120--Hb_003077_020 Hb_000413_240 Hb_000413_240 Hb_029866_120--Hb_000413_240 Hb_000137_040 Hb_000137_040 Hb_029866_120--Hb_000137_040 Hb_010137_060 Hb_010137_060 Hb_001427_030--Hb_010137_060 Hb_000016_130 Hb_000016_130 Hb_001427_030--Hb_000016_130 Hb_000130_260 Hb_000130_260 Hb_001427_030--Hb_000130_260 Hb_003663_060 Hb_003663_060 Hb_001427_030--Hb_003663_060 Hb_007922_020 Hb_007922_020 Hb_001427_030--Hb_007922_020 Hb_001427_030--Hb_012506_060 Hb_001860_050 Hb_001860_050 Hb_010812_040--Hb_001860_050 Hb_003540_240 Hb_003540_240 Hb_010812_040--Hb_003540_240 Hb_000046_050 Hb_000046_050 Hb_010812_040--Hb_000046_050 Hb_000300_080 Hb_000300_080 Hb_010812_040--Hb_000300_080 Hb_001513_010 Hb_001513_010 Hb_010812_040--Hb_001513_010 Hb_000487_230 Hb_000487_230 Hb_010812_040--Hb_000487_230
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.445958 0.379847 0.748118 0.520833 0.662881 1.06957
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.287284 2.03109 0.568507 0 1.88067

CAGE analysis