Hb_004088_050

Information

Type -
Description -
Location Contig4088: 48791-55841
Sequence    

Annotation

kegg
ID pda:103711964
description endoribonuclease Dicer homolog 3b-like
nr
ID CAN75041.1
description hypothetical protein VITISV_027174 [Vitis vinifera]
swissprot
ID P10978
description Retrovirus-related Pol polyprotein from transposon TNT 1-94 OS=Nicotiana tabacum PE=2 SV=1
trembl
ID A5BVC1
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_027174 PE=4 SV=1
Gene Ontology
ID GO:0043229
description gag-pol partial

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004088_050 0.0 - - hypothetical protein VITISV_027174 [Vitis vinifera]
2 Hb_000363_450 0.2184883428 - - PREDICTED: phosphatidate cytidylyltransferase 1 [Jatropha curcas]
3 Hb_000049_130 0.249042143 - - PREDICTED: uncharacterized protein LOC104879855 [Vitis vinifera]
4 Hb_001814_060 0.251952188 - - PREDICTED: uncharacterized protein LOC105650637 [Jatropha curcas]
5 Hb_181838_010 0.2531865147 - - PREDICTED: uncharacterized protein LOC105631275 [Jatropha curcas]
6 Hb_002477_020 0.2624846694 - - PREDICTED: uncharacterized protein LOC105631402 [Jatropha curcas]
7 Hb_003540_100 0.2681832119 - - ATP-binding cassette transporter, putative [Ricinus communis]
8 Hb_009296_030 0.2700517206 - - PREDICTED: uncharacterized protein LOC105634328 [Jatropha curcas]
9 Hb_000866_020 0.2730207546 - - hypothetical protein B456_004G042000 [Gossypium raimondii]
10 Hb_007765_050 0.2755526434 - - PREDICTED: probable sugar phosphate/phosphate translocator At3g11320 isoform X1 [Jatropha curcas]
11 Hb_009316_050 0.2759490057 - - PREDICTED: probable E3 ubiquitin-protein ligase RHA2B [Jatropha curcas]
12 Hb_002170_080 0.2783621118 - - phosphate transporter [Manihot esculenta]
13 Hb_003777_140 0.2799253648 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000139_270 0.2808383195 - - hypothetical protein POPTR_0008s14890g [Populus trichocarpa]
15 Hb_022137_050 0.2817361965 - - PREDICTED: BAG family molecular chaperone regulator 1-like [Jatropha curcas]
16 Hb_000915_190 0.2855463262 - - -
17 Hb_044653_070 0.2859463552 - - hypothetical protein CICLE_v10018540mg [Citrus clementina]
18 Hb_003494_030 0.288593084 - - PREDICTED: protease Do-like 8, chloroplastic [Jatropha curcas]
19 Hb_002518_100 0.288620787 - - -
20 Hb_030627_010 0.289521922 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At1g05700 [Sesamum indicum]

Gene co-expression network

sample Hb_004088_050 Hb_004088_050 Hb_000363_450 Hb_000363_450 Hb_004088_050--Hb_000363_450 Hb_000049_130 Hb_000049_130 Hb_004088_050--Hb_000049_130 Hb_001814_060 Hb_001814_060 Hb_004088_050--Hb_001814_060 Hb_181838_010 Hb_181838_010 Hb_004088_050--Hb_181838_010 Hb_002477_020 Hb_002477_020 Hb_004088_050--Hb_002477_020 Hb_003540_100 Hb_003540_100 Hb_004088_050--Hb_003540_100 Hb_003777_140 Hb_003777_140 Hb_000363_450--Hb_003777_140 Hb_128750_010 Hb_128750_010 Hb_000363_450--Hb_128750_010 Hb_010743_010 Hb_010743_010 Hb_000363_450--Hb_010743_010 Hb_000445_160 Hb_000445_160 Hb_000363_450--Hb_000445_160 Hb_000866_020 Hb_000866_020 Hb_000363_450--Hb_000866_020 Hb_041139_010 Hb_041139_010 Hb_000363_450--Hb_041139_010 Hb_000049_130--Hb_181838_010 Hb_000049_130--Hb_001814_060 Hb_001221_200 Hb_001221_200 Hb_000049_130--Hb_001221_200 Hb_000350_030 Hb_000350_030 Hb_000049_130--Hb_000350_030 Hb_006693_040 Hb_006693_040 Hb_000049_130--Hb_006693_040 Hb_000556_010 Hb_000556_010 Hb_000049_130--Hb_000556_010 Hb_000915_190 Hb_000915_190 Hb_001814_060--Hb_000915_190 Hb_001814_060--Hb_000363_450 Hb_001814_060--Hb_000445_160 Hb_000483_320 Hb_000483_320 Hb_001814_060--Hb_000483_320 Hb_001814_060--Hb_128750_010 Hb_181838_010--Hb_000350_030 Hb_001163_020 Hb_001163_020 Hb_181838_010--Hb_001163_020 Hb_001348_090 Hb_001348_090 Hb_181838_010--Hb_001348_090 Hb_181838_010--Hb_001221_200 Hb_004242_170 Hb_004242_170 Hb_181838_010--Hb_004242_170 Hb_001793_050 Hb_001793_050 Hb_181838_010--Hb_001793_050 Hb_009296_030 Hb_009296_030 Hb_002477_020--Hb_009296_030 Hb_000317_180 Hb_000317_180 Hb_002477_020--Hb_000317_180 Hb_022137_050 Hb_022137_050 Hb_002477_020--Hb_022137_050 Hb_134949_010 Hb_134949_010 Hb_002477_020--Hb_134949_010 Hb_001195_290 Hb_001195_290 Hb_002477_020--Hb_001195_290 Hb_000029_330 Hb_000029_330 Hb_002477_020--Hb_000029_330 Hb_001439_020 Hb_001439_020 Hb_003540_100--Hb_001439_020 Hb_006922_070 Hb_006922_070 Hb_003540_100--Hb_006922_070 Hb_009316_050 Hb_009316_050 Hb_003540_100--Hb_009316_050 Hb_004374_160 Hb_004374_160 Hb_003540_100--Hb_004374_160 Hb_002170_080 Hb_002170_080 Hb_003540_100--Hb_002170_080 Hb_011794_100 Hb_011794_100 Hb_003540_100--Hb_011794_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.034896 0.0263974 0 0.0177899
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.016641 0 0.00661694 0.0704545

CAGE analysis