Hb_000445_160

Information

Type -
Description -
Location Contig445: 187877-188332
Sequence    

Annotation

kegg
ID pop:POPTR_0002s07780g
description POPTRDRAFT_798666; calcium-binding family protein
nr
ID XP_012078334.1
description PREDICTED: probable calcium-binding protein CML44 [Jatropha curcas]
swissprot
ID Q9LPK5
description Probable calcium-binding protein CML44 OS=Arabidopsis thaliana GN=CML44 PE=2 SV=2
trembl
ID A0A067K9G2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12163 PE=4 SV=1
Gene Ontology
ID GO:0005509
description probable calcium-binding protein cml44

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000445_160 0.0 - - PREDICTED: probable calcium-binding protein CML44 [Jatropha curcas]
2 Hb_113379_010 0.1191326268 - - PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1 [Jatropha curcas]
3 Hb_128750_010 0.1249663702 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
4 Hb_001384_040 0.1249801608 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
5 Hb_114893_010 0.1309762019 - - Flavonol 4'-sulfotransferase, putative [Ricinus communis]
6 Hb_006142_050 0.1311953267 - - LRR receptor-like serine/threonine-protein kinase, putative [Theobroma cacao]
7 Hb_006053_020 0.1322578739 - - CAP [Theobroma cacao]
8 Hb_005155_030 0.1359799498 - - PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
9 Hb_002122_070 0.1360674643 - - unnamed protein product [Vitis vinifera]
10 Hb_002740_060 0.1383607451 - - PREDICTED: pectin acetylesterase 12 [Jatropha curcas]
11 Hb_039435_020 0.1402029692 - - Lysosomal Pro-X carboxypeptidase, putative [Ricinus communis]
12 Hb_002835_050 0.1485998794 - - PREDICTED: high-affinity nitrate transporter 3.1-like [Jatropha curcas]
13 Hb_012539_080 0.1494685301 - - Polyprotein, putative [Solanum demissum]
14 Hb_004724_260 0.1562217341 - - PREDICTED: 40S ribosomal protein S14-2-like [Gossypium raimondii]
15 Hb_000675_010 0.1565165159 - - PREDICTED: cytokinin dehydrogenase 7 [Jatropha curcas]
16 Hb_000907_130 0.1566446211 - - -
17 Hb_001300_240 0.1590053509 - - shikimate dehydrogenase, putative [Ricinus communis]
18 Hb_119443_010 0.1595993916 - - hypothetical protein JCGZ_17348 [Jatropha curcas]
19 Hb_004896_030 0.1601020428 - - hypothetical protein VITISV_007475 [Vitis vinifera]
20 Hb_097783_030 0.160324958 - - PREDICTED: probable peroxidase 61 [Jatropha curcas]

Gene co-expression network

sample Hb_000445_160 Hb_000445_160 Hb_113379_010 Hb_113379_010 Hb_000445_160--Hb_113379_010 Hb_128750_010 Hb_128750_010 Hb_000445_160--Hb_128750_010 Hb_001384_040 Hb_001384_040 Hb_000445_160--Hb_001384_040 Hb_114893_010 Hb_114893_010 Hb_000445_160--Hb_114893_010 Hb_006142_050 Hb_006142_050 Hb_000445_160--Hb_006142_050 Hb_006053_020 Hb_006053_020 Hb_000445_160--Hb_006053_020 Hb_113379_010--Hb_001384_040 Hb_002740_060 Hb_002740_060 Hb_113379_010--Hb_002740_060 Hb_011618_010 Hb_011618_010 Hb_113379_010--Hb_011618_010 Hb_012539_080 Hb_012539_080 Hb_113379_010--Hb_012539_080 Hb_005155_030 Hb_005155_030 Hb_113379_010--Hb_005155_030 Hb_113379_010--Hb_114893_010 Hb_128750_010--Hb_002740_060 Hb_029386_010 Hb_029386_010 Hb_128750_010--Hb_029386_010 Hb_004896_030 Hb_004896_030 Hb_128750_010--Hb_004896_030 Hb_000223_090 Hb_000223_090 Hb_128750_010--Hb_000223_090 Hb_005622_040 Hb_005622_040 Hb_128750_010--Hb_005622_040 Hb_001384_040--Hb_011618_010 Hb_001384_040--Hb_002740_060 Hb_008253_050 Hb_008253_050 Hb_001384_040--Hb_008253_050 Hb_041139_010 Hb_041139_010 Hb_001384_040--Hb_041139_010 Hb_002001_030 Hb_002001_030 Hb_001384_040--Hb_002001_030 Hb_001300_240 Hb_001300_240 Hb_114893_010--Hb_001300_240 Hb_002122_070 Hb_002122_070 Hb_114893_010--Hb_002122_070 Hb_039435_020 Hb_039435_020 Hb_114893_010--Hb_039435_020 Hb_004242_200 Hb_004242_200 Hb_114893_010--Hb_004242_200 Hb_010381_080 Hb_010381_080 Hb_114893_010--Hb_010381_080 Hb_000199_090 Hb_000199_090 Hb_114893_010--Hb_000199_090 Hb_000237_120 Hb_000237_120 Hb_006142_050--Hb_000237_120 Hb_032143_010 Hb_032143_010 Hb_006142_050--Hb_032143_010 Hb_007101_140 Hb_007101_140 Hb_006142_050--Hb_007101_140 Hb_010264_010 Hb_010264_010 Hb_006142_050--Hb_010264_010 Hb_000621_030 Hb_000621_030 Hb_006142_050--Hb_000621_030 Hb_004162_140 Hb_004162_140 Hb_006142_050--Hb_004162_140 Hb_006053_020--Hb_039435_020 Hb_002701_060 Hb_002701_060 Hb_006053_020--Hb_002701_060 Hb_006053_020--Hb_002122_070 Hb_006970_120 Hb_006970_120 Hb_006053_020--Hb_006970_120 Hb_067558_010 Hb_067558_010 Hb_006053_020--Hb_067558_010 Hb_000072_110 Hb_000072_110 Hb_006053_020--Hb_000072_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0576277 1.22513 1.09629 0 0.145232
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.775841 3.15291

CAGE analysis