Hb_000363_450

Information

Type -
Description -
Location Contig363: 393952-398214
Sequence    

Annotation

kegg
ID tcc:TCM_030790
description Phosphatidate cytidylyltransferase
nr
ID XP_012070911.1
description PREDICTED: phosphatidate cytidylyltransferase 1 [Jatropha curcas]
swissprot
ID Q1PE48
description Phosphatidate cytidylyltransferase 3 OS=Arabidopsis thaliana GN=CDS3 PE=1 SV=1
trembl
ID A0A067KSU0
description Phosphatidate cytidylyltransferase OS=Jatropha curcas GN=JCGZ_00954 PE=3 SV=1
Gene Ontology
ID GO:0016021
description phosphatidate cytidylyltransferase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_37344: 396588-397930
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000363_450 0.0 - - PREDICTED: phosphatidate cytidylyltransferase 1 [Jatropha curcas]
2 Hb_003777_140 0.1612822925 - - conserved hypothetical protein [Ricinus communis]
3 Hb_128750_010 0.1663499574 - - PREDICTED: receptor-like protein 12 [Populus euphratica]
4 Hb_010743_010 0.1704232652 transcription factor TF Family: NAC transcription factor, putative [Ricinus communis]
5 Hb_000445_160 0.1794165396 - - PREDICTED: probable calcium-binding protein CML44 [Jatropha curcas]
6 Hb_000866_020 0.1823085603 - - hypothetical protein B456_004G042000 [Gossypium raimondii]
7 Hb_041139_010 0.1827051563 - - PREDICTED: probable terpene synthase 13 [Jatropha curcas]
8 Hb_000340_270 0.1833077086 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105650047 [Jatropha curcas]
9 Hb_008253_050 0.1834745495 transcription factor TF Family: MYB hypothetical protein POPTR_0001s36220g [Populus trichocarpa]
10 Hb_011618_010 0.1850563546 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
11 Hb_000590_110 0.1872963501 - - conserved hypothetical protein [Ricinus communis]
12 Hb_001384_040 0.1883587837 - - PREDICTED: beta-glucosidase 17-like [Jatropha curcas]
13 Hb_000139_270 0.1913091547 - - hypothetical protein POPTR_0008s14890g [Populus trichocarpa]
14 Hb_000621_030 0.1931594199 - - PREDICTED: uncharacterized protein LOC105638736 isoform X1 [Jatropha curcas]
15 Hb_113379_010 0.1944440457 - - PREDICTED: beta-xylosidase/alpha-L-arabinofuranosidase 1 [Jatropha curcas]
16 Hb_000005_370 0.194591624 transcription factor TF Family: mTERF PREDICTED: uncharacterized protein LOC105634024 [Jatropha curcas]
17 Hb_000696_060 0.1946236238 - - conserved hypothetical protein [Ricinus communis]
18 Hb_004096_210 0.1947514987 - - PREDICTED: uncharacterized protein LOC105638707 isoform X2 [Jatropha curcas]
19 Hb_029386_010 0.1953799491 - - RALF-LIKE 27 family protein [Populus trichocarpa]
20 Hb_002001_030 0.1963527579 - - Plasma membrane ATPase 4 [Gossypium arboreum]

Gene co-expression network

sample Hb_000363_450 Hb_000363_450 Hb_003777_140 Hb_003777_140 Hb_000363_450--Hb_003777_140 Hb_128750_010 Hb_128750_010 Hb_000363_450--Hb_128750_010 Hb_010743_010 Hb_010743_010 Hb_000363_450--Hb_010743_010 Hb_000445_160 Hb_000445_160 Hb_000363_450--Hb_000445_160 Hb_000866_020 Hb_000866_020 Hb_000363_450--Hb_000866_020 Hb_041139_010 Hb_041139_010 Hb_000363_450--Hb_041139_010 Hb_166718_010 Hb_166718_010 Hb_003777_140--Hb_166718_010 Hb_006831_090 Hb_006831_090 Hb_003777_140--Hb_006831_090 Hb_002387_010 Hb_002387_010 Hb_003777_140--Hb_002387_010 Hb_086300_010 Hb_086300_010 Hb_003777_140--Hb_086300_010 Hb_172426_070 Hb_172426_070 Hb_003777_140--Hb_172426_070 Hb_000139_360 Hb_000139_360 Hb_003777_140--Hb_000139_360 Hb_002740_060 Hb_002740_060 Hb_128750_010--Hb_002740_060 Hb_029386_010 Hb_029386_010 Hb_128750_010--Hb_029386_010 Hb_004896_030 Hb_004896_030 Hb_128750_010--Hb_004896_030 Hb_128750_010--Hb_000445_160 Hb_000223_090 Hb_000223_090 Hb_128750_010--Hb_000223_090 Hb_005622_040 Hb_005622_040 Hb_128750_010--Hb_005622_040 Hb_137222_010 Hb_137222_010 Hb_010743_010--Hb_137222_010 Hb_012655_010 Hb_012655_010 Hb_010743_010--Hb_012655_010 Hb_004204_060 Hb_004204_060 Hb_010743_010--Hb_004204_060 Hb_001409_080 Hb_001409_080 Hb_010743_010--Hb_001409_080 Hb_001491_070 Hb_001491_070 Hb_010743_010--Hb_001491_070 Hb_162174_010 Hb_162174_010 Hb_010743_010--Hb_162174_010 Hb_113379_010 Hb_113379_010 Hb_000445_160--Hb_113379_010 Hb_001384_040 Hb_001384_040 Hb_000445_160--Hb_001384_040 Hb_114893_010 Hb_114893_010 Hb_000445_160--Hb_114893_010 Hb_006142_050 Hb_006142_050 Hb_000445_160--Hb_006142_050 Hb_006053_020 Hb_006053_020 Hb_000445_160--Hb_006053_020 Hb_004096_210 Hb_004096_210 Hb_000866_020--Hb_004096_210 Hb_000618_110 Hb_000618_110 Hb_000866_020--Hb_000618_110 Hb_003177_050 Hb_003177_050 Hb_000866_020--Hb_003177_050 Hb_000327_260 Hb_000327_260 Hb_000866_020--Hb_000327_260 Hb_000352_280 Hb_000352_280 Hb_000866_020--Hb_000352_280 Hb_074197_030 Hb_074197_030 Hb_000866_020--Hb_074197_030 Hb_008253_050 Hb_008253_050 Hb_041139_010--Hb_008253_050 Hb_011618_010 Hb_011618_010 Hb_041139_010--Hb_011618_010 Hb_008441_010 Hb_008441_010 Hb_041139_010--Hb_008441_010 Hb_002001_030 Hb_002001_030 Hb_041139_010--Hb_002001_030 Hb_001894_100 Hb_001894_100 Hb_041139_010--Hb_001894_100 Hb_041139_010--Hb_172426_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.244089 0.305358 0.0142374 0.0421651
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0272671 0 0.0762876 0.62499

CAGE analysis