Hb_000205_230

Information

Type transcription factor
Description TF Family: zf-HD
Location Contig205: 290314-290802
Sequence    

Annotation

kegg
ID rcu:RCOM_0609810
description transcription factor, putative
nr
ID XP_002521997.1
description transcription factor, putative [Ricinus communis]
swissprot
ID A2Z259
description Zinc-finger homeodomain protein 1 OS=Oryza sativa subsp. indica GN=ZHD1 PE=3 SV=1
trembl
ID B9S7M8
description Transcription factor, putative OS=Ricinus communis GN=RCOM_0609810 PE=4 SV=1
Gene Ontology
ID GO:0003677
description zinc-finger homeodomain protein 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000205_230 0.0 transcription factor TF Family: zf-HD transcription factor, putative [Ricinus communis]
2 Hb_003177_090 0.1710258106 - - PREDICTED: filament-like plant protein 4 [Jatropha curcas]
3 Hb_049293_010 0.1913370838 - - kinase, putative [Ricinus communis]
4 Hb_001195_250 0.1913883037 - - lrr receptor protein kinase, putative [Ricinus communis]
5 Hb_001538_020 0.1956824061 - - PREDICTED: uncharacterized protein LOC105629608 [Jatropha curcas]
6 Hb_002099_060 0.196253993 - - Protein AFR, putative [Ricinus communis]
7 Hb_000757_020 0.1968532229 - - PREDICTED: multiple C2 and transmembrane domain-containing protein 2 [Jatropha curcas]
8 Hb_000714_120 0.1969192362 - - PREDICTED: vacuolar-sorting receptor 6-like [Jatropha curcas]
9 Hb_002671_060 0.1987193448 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase SD3-1 [Jatropha curcas]
10 Hb_003687_010 0.1988413659 - - Cysteine-rich RLK 29, putative [Theobroma cacao]
11 Hb_000438_020 0.1992163523 - - leucine-rich repeat-containing protein 2, lrrc2, putative [Ricinus communis]
12 Hb_001689_030 0.2017017468 - - PREDICTED: J domain-containing protein required for chloroplast accumulation response 1 [Jatropha curcas]
13 Hb_001951_070 0.2039415352 - - putative protein [Arabidopsis thaliana]
14 Hb_003517_100 0.2043976015 transcription factor TF Family: GRAS -
15 Hb_002010_070 0.2050829993 - - hypothetical protein EUGRSUZ_I027342, partial [Eucalyptus grandis]
16 Hb_003007_030 0.2056293866 - - -
17 Hb_006040_170 0.2067949334 - - NADH-ubiquinone oxidoreductase chain [Medicago truncatula]
18 Hb_004007_200 0.2070614385 - - PREDICTED: BTB/POZ domain-containing protein NPY5 [Jatropha curcas]
19 Hb_005183_040 0.2071127905 desease resistance Gene Name: NB-ARC Disease resistance protein RPM1, putative [Ricinus communis]
20 Hb_000594_130 0.2076317346 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]

Gene co-expression network

sample Hb_000205_230 Hb_000205_230 Hb_003177_090 Hb_003177_090 Hb_000205_230--Hb_003177_090 Hb_049293_010 Hb_049293_010 Hb_000205_230--Hb_049293_010 Hb_001195_250 Hb_001195_250 Hb_000205_230--Hb_001195_250 Hb_001538_020 Hb_001538_020 Hb_000205_230--Hb_001538_020 Hb_002099_060 Hb_002099_060 Hb_000205_230--Hb_002099_060 Hb_000757_020 Hb_000757_020 Hb_000205_230--Hb_000757_020 Hb_006040_170 Hb_006040_170 Hb_003177_090--Hb_006040_170 Hb_001689_030 Hb_001689_030 Hb_003177_090--Hb_001689_030 Hb_002344_080 Hb_002344_080 Hb_003177_090--Hb_002344_080 Hb_003177_090--Hb_000757_020 Hb_000418_150 Hb_000418_150 Hb_003177_090--Hb_000418_150 Hb_143629_200 Hb_143629_200 Hb_003177_090--Hb_143629_200 Hb_049293_010--Hb_000757_020 Hb_049293_010--Hb_003177_090 Hb_000251_050 Hb_000251_050 Hb_049293_010--Hb_000251_050 Hb_001195_370 Hb_001195_370 Hb_049293_010--Hb_001195_370 Hb_000366_030 Hb_000366_030 Hb_049293_010--Hb_000366_030 Hb_049293_010--Hb_000418_150 Hb_000103_410 Hb_000103_410 Hb_001195_250--Hb_000103_410 Hb_000753_150 Hb_000753_150 Hb_001195_250--Hb_000753_150 Hb_001195_250--Hb_003177_090 Hb_001269_520 Hb_001269_520 Hb_001195_250--Hb_001269_520 Hb_006717_010 Hb_006717_010 Hb_001195_250--Hb_006717_010 Hb_001195_250--Hb_000251_050 Hb_000417_020 Hb_000417_020 Hb_001538_020--Hb_000417_020 Hb_001538_020--Hb_001269_520 Hb_001538_020--Hb_000251_050 Hb_001538_020--Hb_002099_060 Hb_000714_120 Hb_000714_120 Hb_001538_020--Hb_000714_120 Hb_002110_090 Hb_002110_090 Hb_001538_020--Hb_002110_090 Hb_000438_020 Hb_000438_020 Hb_002099_060--Hb_000438_020 Hb_029748_020 Hb_029748_020 Hb_002099_060--Hb_029748_020 Hb_005724_040 Hb_005724_040 Hb_002099_060--Hb_005724_040 Hb_004864_020 Hb_004864_020 Hb_002099_060--Hb_004864_020 Hb_000181_230 Hb_000181_230 Hb_002099_060--Hb_000181_230 Hb_002099_060--Hb_000418_150 Hb_000757_020--Hb_000418_150 Hb_155150_010 Hb_155150_010 Hb_000757_020--Hb_155150_010 Hb_000757_020--Hb_000714_120 Hb_000757_020--Hb_000366_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.178219 0.665913 0.287313 0.753217 0.059926 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.109385 0 0.546851 1.0173

CAGE analysis