Hb_097969_010

Information

Type -
Description -
Location Contig97969: 5872-8009
Sequence    

Annotation

kegg
ID rcu:RCOM_0471210
description F-box/LRR-repeat protein, putative
nr
ID XP_002527327.1
description F-box/LRR-repeat protein, putative [Ricinus communis]
swissprot
ID A6H779
description F-box/LRR-repeat protein 2 OS=Bos taurus GN=FBXL2 PE=2 SV=1
trembl
ID B9SMV8
description F-box/LRR-repeat protein, putative OS=Ricinus communis GN=RCOM_0471210 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_097969_010 0.0 - - F-box/LRR-repeat protein, putative [Ricinus communis]
2 Hb_028487_090 0.2362659952 - - -
3 Hb_002374_130 0.3127387151 - - PREDICTED: metal transporter Nramp5-like [Populus euphratica]
4 Hb_187951_010 0.3545928432 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
5 Hb_002870_050 0.358769617 - - -
6 Hb_037281_010 0.375184274 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
7 Hb_002860_020 0.3770396143 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
8 Hb_134711_010 0.3871482108 - - hypothetical protein EUGRSUZ_D00316 [Eucalyptus grandis]
9 Hb_003124_210 0.38880004 - - conserved hypothetical protein [Ricinus communis]
10 Hb_008315_010 0.3979436359 - - PREDICTED: uncharacterized protein LOC105772042 [Gossypium raimondii]
11 Hb_004289_040 0.4075845414 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
12 Hb_000018_050 0.4227178151 - - PREDICTED: uncharacterized protein LOC104899363 [Beta vulgaris subsp. vulgaris]
13 Hb_000419_110 0.4230323087 - - hypothetical protein JCGZ_20036 [Jatropha curcas]
14 Hb_000330_180 0.4252813579 - - -
15 Hb_004994_370 0.4274519421 - - -
16 Hb_002235_290 0.4281623817 - - PREDICTED: casparian strip membrane protein 5 [Jatropha curcas]
17 Hb_002027_150 0.431959585 - - -
18 Hb_037790_010 0.4330603099 - - PREDICTED: uncharacterized protein LOC105795045 [Gossypium raimondii]
19 Hb_175748_010 0.4331942661 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
20 Hb_002639_060 0.4337562829 - - -

Gene co-expression network

sample Hb_097969_010 Hb_097969_010 Hb_028487_090 Hb_028487_090 Hb_097969_010--Hb_028487_090 Hb_002374_130 Hb_002374_130 Hb_097969_010--Hb_002374_130 Hb_187951_010 Hb_187951_010 Hb_097969_010--Hb_187951_010 Hb_002870_050 Hb_002870_050 Hb_097969_010--Hb_002870_050 Hb_037281_010 Hb_037281_010 Hb_097969_010--Hb_037281_010 Hb_002860_020 Hb_002860_020 Hb_097969_010--Hb_002860_020 Hb_028487_090--Hb_002374_130 Hb_028487_090--Hb_002870_050 Hb_175748_010 Hb_175748_010 Hb_028487_090--Hb_175748_010 Hb_003938_040 Hb_003938_040 Hb_028487_090--Hb_003938_040 Hb_007108_060 Hb_007108_060 Hb_028487_090--Hb_007108_060 Hb_002374_130--Hb_002870_050 Hb_002374_130--Hb_175748_010 Hb_000676_210 Hb_000676_210 Hb_002374_130--Hb_000676_210 Hb_003207_140 Hb_003207_140 Hb_002374_130--Hb_003207_140 Hb_004730_030 Hb_004730_030 Hb_002374_130--Hb_004730_030 Hb_002235_290 Hb_002235_290 Hb_187951_010--Hb_002235_290 Hb_187951_010--Hb_037281_010 Hb_012286_080 Hb_012286_080 Hb_187951_010--Hb_012286_080 Hb_000742_150 Hb_000742_150 Hb_187951_010--Hb_000742_150 Hb_002996_020 Hb_002996_020 Hb_187951_010--Hb_002996_020 Hb_002870_050--Hb_175748_010 Hb_042795_010 Hb_042795_010 Hb_002870_050--Hb_042795_010 Hb_053575_010 Hb_053575_010 Hb_002870_050--Hb_053575_010 Hb_003401_040 Hb_003401_040 Hb_002870_050--Hb_003401_040 Hb_004076_040 Hb_004076_040 Hb_037281_010--Hb_004076_040 Hb_184746_010 Hb_184746_010 Hb_037281_010--Hb_184746_010 Hb_020469_010 Hb_020469_010 Hb_037281_010--Hb_020469_010 Hb_037281_010--Hb_002235_290 Hb_014720_130 Hb_014720_130 Hb_037281_010--Hb_014720_130 Hb_037790_010 Hb_037790_010 Hb_002860_020--Hb_037790_010 Hb_134711_010 Hb_134711_010 Hb_002860_020--Hb_134711_010 Hb_000018_050 Hb_000018_050 Hb_002860_020--Hb_000018_050 Hb_010589_140 Hb_010589_140 Hb_002860_020--Hb_010589_140 Hb_155720_010 Hb_155720_010 Hb_002860_020--Hb_155720_010 Hb_164370_010 Hb_164370_010 Hb_002860_020--Hb_164370_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0229901 0.0861397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.123887 0 0 0.0843051

CAGE analysis