Hb_175748_010

Information

Type -
Description -
Location Contig175748: 694-3281
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID P11283
description Gag-Pro-Pol polyprotein OS=Mouse mammary tumor virus (strain C3H) GN=gag-pro-pol PE=1 SV=2
trembl
ID M5X787
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_175748_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_002374_130 0.1498640585 - - PREDICTED: metal transporter Nramp5-like [Populus euphratica]
3 Hb_002870_050 0.1617483881 - - -
4 Hb_007924_040 0.2098771532 - - PREDICTED: pollen-specific leucine-rich repeat extensin-like protein 3 [Populus euphratica]
5 Hb_003683_100 0.2098786013 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_000474_020 0.2098908531 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
7 Hb_001072_060 0.2099402377 - - PREDICTED: uncharacterized protein LOC105645525 [Jatropha curcas]
8 Hb_035484_010 0.213717722 - - PREDICTED: leucine-rich repeat receptor protein kinase EMS1-like [Jatropha curcas]
9 Hb_029154_020 0.2428572883 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_029793_020 0.2429172483 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_002223_010 0.2431183368 - - hypothetical protein VITISV_009489 [Vitis vinifera]
12 Hb_004337_010 0.2431255644 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_003207_140 0.2445461553 - - PREDICTED: protein HOTHEAD [Jatropha curcas]
14 Hb_000676_210 0.2446917527 - - Cytochrome P450 superfamily protein [Theobroma cacao]
15 Hb_004730_030 0.2462133129 - - synaptonemal complex protein, putative [Ricinus communis]
16 Hb_002431_070 0.246348152 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA11 [Jatropha curcas]
17 Hb_085438_010 0.2463949005 - - PREDICTED: uncharacterized protein LOC105638675 [Jatropha curcas]
18 Hb_007908_010 0.2469429379 - - -
19 Hb_108331_010 0.2490111994 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
20 Hb_163434_010 0.2503501945 - - hypothetical protein JCGZ_13470 [Jatropha curcas]

Gene co-expression network

sample Hb_175748_010 Hb_175748_010 Hb_002374_130 Hb_002374_130 Hb_175748_010--Hb_002374_130 Hb_002870_050 Hb_002870_050 Hb_175748_010--Hb_002870_050 Hb_007924_040 Hb_007924_040 Hb_175748_010--Hb_007924_040 Hb_003683_100 Hb_003683_100 Hb_175748_010--Hb_003683_100 Hb_000474_020 Hb_000474_020 Hb_175748_010--Hb_000474_020 Hb_001072_060 Hb_001072_060 Hb_175748_010--Hb_001072_060 Hb_002374_130--Hb_002870_050 Hb_028487_090 Hb_028487_090 Hb_002374_130--Hb_028487_090 Hb_000676_210 Hb_000676_210 Hb_002374_130--Hb_000676_210 Hb_003207_140 Hb_003207_140 Hb_002374_130--Hb_003207_140 Hb_004730_030 Hb_004730_030 Hb_002374_130--Hb_004730_030 Hb_002870_050--Hb_028487_090 Hb_042795_010 Hb_042795_010 Hb_002870_050--Hb_042795_010 Hb_053575_010 Hb_053575_010 Hb_002870_050--Hb_053575_010 Hb_003401_040 Hb_003401_040 Hb_002870_050--Hb_003401_040 Hb_007924_040--Hb_003683_100 Hb_007924_040--Hb_000474_020 Hb_007924_040--Hb_001072_060 Hb_035484_010 Hb_035484_010 Hb_007924_040--Hb_035484_010 Hb_029154_020 Hb_029154_020 Hb_007924_040--Hb_029154_020 Hb_029793_020 Hb_029793_020 Hb_007924_040--Hb_029793_020 Hb_003683_100--Hb_000474_020 Hb_003683_100--Hb_001072_060 Hb_003683_100--Hb_035484_010 Hb_003683_100--Hb_029154_020 Hb_003683_100--Hb_029793_020 Hb_000474_020--Hb_001072_060 Hb_000474_020--Hb_035484_010 Hb_000474_020--Hb_029154_020 Hb_000474_020--Hb_029793_020 Hb_001072_060--Hb_035484_010 Hb_001072_060--Hb_029154_020 Hb_001072_060--Hb_029793_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.00728209
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0148783 0 0 0.0631586

CAGE analysis