Hb_134711_010

Information

Type -
Description -
Location Contig134711: 250-2357
Sequence    

Annotation

kegg
ID pxb:103951258
description beta-xylosidase/alpha-L-arabinofuranosidase 1-like
nr
ID KCW75948.1
description hypothetical protein EUGRSUZ_D00316 [Eucalyptus grandis]
swissprot
ID Q9LJN4
description Probable beta-D-xylosidase 5 OS=Arabidopsis thaliana GN=BXL5 PE=2 SV=2
trembl
ID A0A059CBZ2
description Uncharacterized protein OS=Eucalyptus grandis GN=EUGRSUZ_D00316 PE=4 SV=1
Gene Ontology
ID GO:0016798
description beta-xylosidase alpha-l-arabinofuranosidase 1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_134711_010 0.0 - - hypothetical protein EUGRSUZ_D00316 [Eucalyptus grandis]
2 Hb_002860_020 0.2634045862 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
3 Hb_002027_150 0.3158006621 - - -
4 Hb_011139_050 0.3462582543 - - nicotinate phosphoribosyltransferase family protein [Populus trichocarpa]
5 Hb_001233_040 0.3628810626 - - PREDICTED: uncharacterized protein LOC105775263 [Gossypium raimondii]
6 Hb_187024_090 0.3664986323 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_033363_070 0.3704075997 - - PREDICTED: LOW QUALITY PROTEIN: methionine aminopeptidase 1B, chloroplastic, partial [Populus euphratica]
8 Hb_001733_060 0.3752117819 - - PREDICTED: uncharacterized protein LOC104431099 [Eucalyptus grandis]
9 Hb_001421_070 0.3794867551 - - PREDICTED: ribose-phosphate pyrophosphokinase 1 [Jatropha curcas]
10 Hb_002874_140 0.3856231433 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 11 homolog [Prunus mume]
11 Hb_028487_090 0.3857368138 - - -
12 Hb_006018_070 0.3864239782 - - Cyclic nucleotide-gated ion channel, putative [Ricinus communis]
13 Hb_049944_010 0.3864795284 - - transducin family protein [Populus trichocarpa]
14 Hb_097969_010 0.3871482108 - - F-box/LRR-repeat protein, putative [Ricinus communis]
15 Hb_002141_040 0.3878359198 - - -
16 Hb_033661_010 0.3891491202 - - PREDICTED: uncharacterized protein LOC105852393, partial [Cicer arietinum]
17 Hb_177019_010 0.3895708786 - - Uncharacterized protein TCM_004012 [Theobroma cacao]
18 Hb_005839_050 0.3900836879 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
19 Hb_002078_060 0.3907901609 - - hypothetical protein JCGZ_17943 [Jatropha curcas]
20 Hb_000272_040 0.3912696786 - - -

Gene co-expression network

sample Hb_134711_010 Hb_134711_010 Hb_002860_020 Hb_002860_020 Hb_134711_010--Hb_002860_020 Hb_002027_150 Hb_002027_150 Hb_134711_010--Hb_002027_150 Hb_011139_050 Hb_011139_050 Hb_134711_010--Hb_011139_050 Hb_001233_040 Hb_001233_040 Hb_134711_010--Hb_001233_040 Hb_187024_090 Hb_187024_090 Hb_134711_010--Hb_187024_090 Hb_033363_070 Hb_033363_070 Hb_134711_010--Hb_033363_070 Hb_037790_010 Hb_037790_010 Hb_002860_020--Hb_037790_010 Hb_000018_050 Hb_000018_050 Hb_002860_020--Hb_000018_050 Hb_010589_140 Hb_010589_140 Hb_002860_020--Hb_010589_140 Hb_155720_010 Hb_155720_010 Hb_002860_020--Hb_155720_010 Hb_164370_010 Hb_164370_010 Hb_002860_020--Hb_164370_010 Hb_006869_010 Hb_006869_010 Hb_002027_150--Hb_006869_010 Hb_002027_150--Hb_033363_070 Hb_000097_010 Hb_000097_010 Hb_002027_150--Hb_000097_010 Hb_001571_110 Hb_001571_110 Hb_002027_150--Hb_001571_110 Hb_001017_060 Hb_001017_060 Hb_002027_150--Hb_001017_060 Hb_001301_050 Hb_001301_050 Hb_002027_150--Hb_001301_050 Hb_011872_010 Hb_011872_010 Hb_011139_050--Hb_011872_010 Hb_000272_040 Hb_000272_040 Hb_011139_050--Hb_000272_040 Hb_148800_010 Hb_148800_010 Hb_011139_050--Hb_148800_010 Hb_000656_050 Hb_000656_050 Hb_011139_050--Hb_000656_050 Hb_007317_090 Hb_007317_090 Hb_011139_050--Hb_007317_090 Hb_004466_050 Hb_004466_050 Hb_011139_050--Hb_004466_050 Hb_035935_010 Hb_035935_010 Hb_001233_040--Hb_035935_010 Hb_001733_060 Hb_001733_060 Hb_001233_040--Hb_001733_060 Hb_003813_160 Hb_003813_160 Hb_001233_040--Hb_003813_160 Hb_033661_010 Hb_033661_010 Hb_001233_040--Hb_033661_010 Hb_000661_080 Hb_000661_080 Hb_001233_040--Hb_000661_080 Hb_057207_010 Hb_057207_010 Hb_001233_040--Hb_057207_010 Hb_000965_010 Hb_000965_010 Hb_187024_090--Hb_000965_010 Hb_000685_090 Hb_000685_090 Hb_187024_090--Hb_000685_090 Hb_008008_020 Hb_008008_020 Hb_187024_090--Hb_008008_020 Hb_022793_010 Hb_022793_010 Hb_187024_090--Hb_022793_010 Hb_010691_010 Hb_010691_010 Hb_187024_090--Hb_010691_010 Hb_000084_170 Hb_000084_170 Hb_187024_090--Hb_000084_170 Hb_000087_030 Hb_000087_030 Hb_033363_070--Hb_000087_030 Hb_012052_010 Hb_012052_010 Hb_033363_070--Hb_012052_010 Hb_005714_130 Hb_005714_130 Hb_033363_070--Hb_005714_130 Hb_000051_170 Hb_000051_170 Hb_033363_070--Hb_000051_170 Hb_000656_100 Hb_000656_100 Hb_033363_070--Hb_000656_100 Hb_004060_030 Hb_004060_030 Hb_033363_070--Hb_004060_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0196718 0.0157571 0 0.0118109 0 0.0855594
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.113414 0 0.0226768 0.0589864

CAGE analysis