Hb_010589_140

Information

Type -
Description -
Location Contig10589: 91959-93070
Sequence    

Annotation

kegg
ID fve:101298277
description pentatricopeptide repeat-containing protein At2g29760, chloroplastic-like
nr
ID XP_004309732.2
description PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Fragaria vesca subsp. vesca]
swissprot
ID Q9SVP7
description Pentatricopeptide repeat-containing protein At4g13650 OS=Arabidopsis thaliana GN=PCMP-H42 PE=2 SV=2
trembl
ID F6H681
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_03s0091g00370 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_010589_140 0.0 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08070-like [Fragaria vesca subsp. vesca]
2 Hb_009246_010 0.2251545887 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_002639_060 0.2689088049 - - -
4 Hb_000772_040 0.3029072276 - - PREDICTED: uncharacterized protein LOC105036273 [Elaeis guineensis]
5 Hb_001703_120 0.3200519685 - - PREDICTED: uncharacterized protein LOC105116966 isoform X2 [Populus euphratica]
6 Hb_039262_010 0.3327413521 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
7 Hb_000399_010 0.3355079675 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
8 Hb_000932_100 0.3389276756 - - -
9 Hb_003786_020 0.3408078113 - - PREDICTED: BTB/POZ domain-containing protein At3g50780 [Jatropha curcas]
10 Hb_032496_020 0.3410637842 - - -
11 Hb_000012_460 0.3414830192 - - unknown [Populus trichocarpa]
12 Hb_002025_200 0.3459925362 - - -
13 Hb_008730_010 0.3496899713 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
14 Hb_020665_010 0.3497529605 - - PREDICTED: uncharacterized protein LOC103438977 isoform X2 [Malus domestica]
15 Hb_004097_060 0.3532263123 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000062_150 0.354472633 - - PREDICTED: probable carboxylesterase 16 [Jatropha curcas]
17 Hb_002249_100 0.3550566179 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
18 Hb_004440_080 0.3567669095 - - PREDICTED: syntaxin-112 [Populus euphratica]
19 Hb_003170_040 0.3580900017 - - PREDICTED: microfibrillar-associated protein 1-like [Prunus mume]
20 Hb_002860_020 0.3612699646 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]

Gene co-expression network

sample Hb_010589_140 Hb_010589_140 Hb_009246_010 Hb_009246_010 Hb_010589_140--Hb_009246_010 Hb_002639_060 Hb_002639_060 Hb_010589_140--Hb_002639_060 Hb_000772_040 Hb_000772_040 Hb_010589_140--Hb_000772_040 Hb_001703_120 Hb_001703_120 Hb_010589_140--Hb_001703_120 Hb_039262_010 Hb_039262_010 Hb_010589_140--Hb_039262_010 Hb_000399_010 Hb_000399_010 Hb_010589_140--Hb_000399_010 Hb_009246_010--Hb_002639_060 Hb_150528_010 Hb_150528_010 Hb_009246_010--Hb_150528_010 Hb_033594_130 Hb_033594_130 Hb_009246_010--Hb_033594_130 Hb_002025_200 Hb_002025_200 Hb_009246_010--Hb_002025_200 Hb_000062_150 Hb_000062_150 Hb_009246_010--Hb_000062_150 Hb_007926_040 Hb_007926_040 Hb_002639_060--Hb_007926_040 Hb_032496_020 Hb_032496_020 Hb_002639_060--Hb_032496_020 Hb_002205_050 Hb_002205_050 Hb_002639_060--Hb_002205_050 Hb_007101_200 Hb_007101_200 Hb_002639_060--Hb_007101_200 Hb_009543_020 Hb_009543_020 Hb_002639_060--Hb_009543_020 Hb_003786_020 Hb_003786_020 Hb_002639_060--Hb_003786_020 Hb_000772_040--Hb_000399_010 Hb_000012_460 Hb_000012_460 Hb_000772_040--Hb_000012_460 Hb_000772_040--Hb_001703_120 Hb_000865_060 Hb_000865_060 Hb_000772_040--Hb_000865_060 Hb_001294_010 Hb_001294_010 Hb_000772_040--Hb_001294_010 Hb_000160_320 Hb_000160_320 Hb_000772_040--Hb_000160_320 Hb_003861_020 Hb_003861_020 Hb_001703_120--Hb_003861_020 Hb_174473_010 Hb_174473_010 Hb_001703_120--Hb_174473_010 Hb_073452_010 Hb_073452_010 Hb_001703_120--Hb_073452_010 Hb_027402_140 Hb_027402_140 Hb_001703_120--Hb_027402_140 Hb_000193_310 Hb_000193_310 Hb_001703_120--Hb_000193_310 Hb_000684_440 Hb_000684_440 Hb_001703_120--Hb_000684_440 Hb_016482_010 Hb_016482_010 Hb_039262_010--Hb_016482_010 Hb_002888_020 Hb_002888_020 Hb_039262_010--Hb_002888_020 Hb_000976_230 Hb_000976_230 Hb_039262_010--Hb_000976_230 Hb_036311_020 Hb_036311_020 Hb_039262_010--Hb_036311_020 Hb_039262_010--Hb_000399_010 Hb_042202_050 Hb_042202_050 Hb_039262_010--Hb_042202_050 Hb_011484_010 Hb_011484_010 Hb_000399_010--Hb_011484_010 Hb_000283_080 Hb_000283_080 Hb_000399_010--Hb_000283_080 Hb_000399_010--Hb_036311_020 Hb_003906_090 Hb_003906_090 Hb_000399_010--Hb_003906_090 Hb_001523_020 Hb_001523_020 Hb_000399_010--Hb_001523_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.149327 0 0 0 0.0560302 0.135721
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.108099 0.0976442 0.0437755 0.216692

CAGE analysis