Hb_004010_020

Information

Type -
Description -
Location Contig4010: 2888-10182
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa021229mg
description hypothetical protein
nr
ID XP_007213082.1
description hypothetical protein PRUPE_ppa021229mg [Prunus persica]
swissprot
ID P0CT40
description Transposon Tf2-9 polyprotein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=Tf2-9 PE=3 SV=1
trembl
ID M5WLY8
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa021229mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004010_020 0.0 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
2 Hb_007040_010 0.2331356057 - - Uncharacterized protein TCM_024356 [Theobroma cacao]
3 Hb_008758_010 0.2352834314 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
4 Hb_000752_080 0.2504338077 - - -
5 Hb_061940_010 0.2632493659 - - PREDICTED: uncharacterized protein LOC104221396 [Nicotiana sylvestris]
6 Hb_186440_010 0.2814331253 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
7 Hb_097889_010 0.2847453866 - - PREDICTED: uncharacterized protein LOC102584707 [Solanum tuberosum]
8 Hb_011537_090 0.2850721511 - - hypothetical protein B456_009G071100 [Gossypium raimondii]
9 Hb_009188_010 0.2857237403 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
10 Hb_008976_010 0.2859997205 - - -
11 Hb_000710_120 0.2860771893 - - hypothetical protein JCGZ_01844 [Jatropha curcas]
12 Hb_001309_030 0.2861282013 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_004019_100 0.2861555876 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
14 Hb_001972_020 0.2863051714 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
15 Hb_001817_190 0.2863388023 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_010783_010 0.2863607363 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_027890_010 0.2871112264 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
18 Hb_124540_020 0.2874487095 - - polyprotein [Citrus endogenous pararetrovirus]
19 Hb_090778_010 0.2877020806 - - PREDICTED: uncharacterized protein LOC105764482 [Gossypium raimondii]
20 Hb_011616_060 0.2877520296 - - PREDICTED: uncharacterized protein LOC105789623 [Gossypium raimondii]

Gene co-expression network

sample Hb_004010_020 Hb_004010_020 Hb_007040_010 Hb_007040_010 Hb_004010_020--Hb_007040_010 Hb_008758_010 Hb_008758_010 Hb_004010_020--Hb_008758_010 Hb_000752_080 Hb_000752_080 Hb_004010_020--Hb_000752_080 Hb_061940_010 Hb_061940_010 Hb_004010_020--Hb_061940_010 Hb_186440_010 Hb_186440_010 Hb_004010_020--Hb_186440_010 Hb_097889_010 Hb_097889_010 Hb_004010_020--Hb_097889_010 Hb_007040_010--Hb_000752_080 Hb_007040_010--Hb_008758_010 Hb_000059_120 Hb_000059_120 Hb_007040_010--Hb_000059_120 Hb_012184_030 Hb_012184_030 Hb_007040_010--Hb_012184_030 Hb_008206_070 Hb_008206_070 Hb_007040_010--Hb_008206_070 Hb_008758_010--Hb_000752_080 Hb_012404_010 Hb_012404_010 Hb_008758_010--Hb_012404_010 Hb_031691_010 Hb_031691_010 Hb_008758_010--Hb_031691_010 Hb_027890_010 Hb_027890_010 Hb_008758_010--Hb_027890_010 Hb_017604_030 Hb_017604_030 Hb_000752_080--Hb_017604_030 Hb_000752_080--Hb_012184_030 Hb_185839_010 Hb_185839_010 Hb_000752_080--Hb_185839_010 Hb_056095_010 Hb_056095_010 Hb_061940_010--Hb_056095_010 Hb_004052_130 Hb_004052_130 Hb_061940_010--Hb_004052_130 Hb_002260_210 Hb_002260_210 Hb_061940_010--Hb_002260_210 Hb_000108_030 Hb_000108_030 Hb_061940_010--Hb_000108_030 Hb_000710_110 Hb_000710_110 Hb_061940_010--Hb_000710_110 Hb_000311_130 Hb_000311_130 Hb_061940_010--Hb_000311_130 Hb_186440_010--Hb_027890_010 Hb_186440_010--Hb_031691_010 Hb_186440_010--Hb_012404_010 Hb_186440_010--Hb_097889_010 Hb_011537_090 Hb_011537_090 Hb_186440_010--Hb_011537_090 Hb_009188_010 Hb_009188_010 Hb_186440_010--Hb_009188_010 Hb_097889_010--Hb_011537_090 Hb_097889_010--Hb_009188_010 Hb_008976_010 Hb_008976_010 Hb_097889_010--Hb_008976_010 Hb_000710_120 Hb_000710_120 Hb_097889_010--Hb_000710_120 Hb_001309_030 Hb_001309_030 Hb_097889_010--Hb_001309_030 Hb_004019_100 Hb_004019_100 Hb_097889_010--Hb_004019_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.00482321 0.00396483 0 0 0.0135389 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.036849

CAGE analysis