Hb_186440_010

Information

Type -
Description -
Location Contig186440: 288-578
Sequence    

Annotation

kegg
ID pop:POPTR_0006s07230g
description POPTRDRAFT_866249; hypothetical protein
nr
ID XP_012074440.1
description PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
swissprot
ID Q9SZR0
description Choline monooxygenase, chloroplastic OS=Arabidopsis thaliana GN=At4g29890 PE=2 SV=2
trembl
ID A0A067KIJ9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_10308 PE=4 SV=1
Gene Ontology
ID GO:0016491
description choline chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_186440_010 0.0 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
2 Hb_027890_010 0.0384247843 - - PREDICTED: uncharacterized protein LOC105797726 [Gossypium raimondii]
3 Hb_031691_010 0.0425396634 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_012404_010 0.0607224879 - - -
5 Hb_097889_010 0.0788877382 - - PREDICTED: uncharacterized protein LOC102584707 [Solanum tuberosum]
6 Hb_011537_090 0.0807769575 - - hypothetical protein B456_009G071100 [Gossypium raimondii]
7 Hb_009188_010 0.0843647868 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]
8 Hb_008976_010 0.0858207963 - - -
9 Hb_000710_120 0.0862233141 - - hypothetical protein JCGZ_01844 [Jatropha curcas]
10 Hb_001309_030 0.0864869371 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_004019_100 0.0866280035 - - PREDICTED: uncharacterized protein LOC105797448 [Gossypium raimondii]
12 Hb_001972_020 0.0873929218 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_001817_190 0.0875636212 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_010783_010 0.0876747027 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_124540_020 0.0929596347 - - polyprotein [Citrus endogenous pararetrovirus]
16 Hb_090778_010 0.0941332882 - - PREDICTED: uncharacterized protein LOC105764482 [Gossypium raimondii]
17 Hb_011616_060 0.0943623607 - - PREDICTED: uncharacterized protein LOC105789623 [Gossypium raimondii]
18 Hb_001662_020 0.0944616336 - - PREDICTED: F-box protein SKIP23-like isoform X3 [Eucalyptus grandis]
19 Hb_026532_010 0.0965963482 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
20 Hb_068031_010 0.2178303923 - - hypothetical protein VITISV_034229 [Vitis vinifera]

Gene co-expression network

sample Hb_186440_010 Hb_186440_010 Hb_027890_010 Hb_027890_010 Hb_186440_010--Hb_027890_010 Hb_031691_010 Hb_031691_010 Hb_186440_010--Hb_031691_010 Hb_012404_010 Hb_012404_010 Hb_186440_010--Hb_012404_010 Hb_097889_010 Hb_097889_010 Hb_186440_010--Hb_097889_010 Hb_011537_090 Hb_011537_090 Hb_186440_010--Hb_011537_090 Hb_009188_010 Hb_009188_010 Hb_186440_010--Hb_009188_010 Hb_027890_010--Hb_031691_010 Hb_027890_010--Hb_012404_010 Hb_027890_010--Hb_097889_010 Hb_027890_010--Hb_011537_090 Hb_027890_010--Hb_009188_010 Hb_031691_010--Hb_012404_010 Hb_031691_010--Hb_097889_010 Hb_031691_010--Hb_011537_090 Hb_031691_010--Hb_009188_010 Hb_012404_010--Hb_097889_010 Hb_012404_010--Hb_011537_090 Hb_012404_010--Hb_009188_010 Hb_097889_010--Hb_011537_090 Hb_097889_010--Hb_009188_010 Hb_008976_010 Hb_008976_010 Hb_097889_010--Hb_008976_010 Hb_000710_120 Hb_000710_120 Hb_097889_010--Hb_000710_120 Hb_001309_030 Hb_001309_030 Hb_097889_010--Hb_001309_030 Hb_004019_100 Hb_004019_100 Hb_097889_010--Hb_004019_100 Hb_011537_090--Hb_009188_010 Hb_011537_090--Hb_008976_010 Hb_011537_090--Hb_000710_120 Hb_011537_090--Hb_001309_030 Hb_011537_090--Hb_004019_100 Hb_009188_010--Hb_008976_010 Hb_009188_010--Hb_000710_120 Hb_009188_010--Hb_001309_030 Hb_009188_010--Hb_004019_100 Hb_001972_020 Hb_001972_020 Hb_009188_010--Hb_001972_020 Hb_001817_190 Hb_001817_190 Hb_009188_010--Hb_001817_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.31658 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.74971

CAGE analysis