Hb_004459_070

Information

Type -
Description -
Location Contig4459: 51738-55257
Sequence    

Annotation

kegg
ID tcc:TCM_029716
description Maternal effect embryo arrest 18
nr
ID XP_012091759.1
description PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
swissprot
ID A2XQE8
description Senescence-specific cysteine protease SAG39 OS=Oryza sativa subsp. indica GN=OsI_14861 PE=3 SV=1
trembl
ID A0A061GDQ9
description Maternal effect embryo arrest 18 OS=Theobroma cacao GN=TCM_029716 PE=4 SV=1
Gene Ontology
ID GO:0008234
description kdel-tailed cysteine endopeptidase cep1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004459_070 0.0 - - PREDICTED: uncharacterized protein LOC105649658 [Jatropha curcas]
2 Hb_007313_060 0.2109707455 - - PREDICTED: paramyosin [Jatropha curcas]
3 Hb_007810_070 0.2364942362 - - hypothetical protein VITISV_027174 [Vitis vinifera]
4 Hb_001488_260 0.2400430518 - - Alpha-2-macroglobulin [Gossypium arboreum]
5 Hb_005656_150 0.2461885647 - - 26S proteasome non-ATPase regulatory subunit 11 [Theobroma cacao]
6 Hb_023675_030 0.2650424217 - - -
7 Hb_000395_090 0.268154584 - - PREDICTED: uncharacterized protein LOC105645572 [Jatropha curcas]
8 Hb_003633_120 0.2708044431 - - PREDICTED: uncharacterized protein LOC104880778 [Vitis vinifera]
9 Hb_000012_440 0.2722705391 - - PREDICTED: uncharacterized protein LOC104248335 [Nicotiana sylvestris]
10 Hb_000120_900 0.2741480502 - - catalase [Hevea brasiliensis]
11 Hb_006856_030 0.2751242839 - - Uridine kinase-like protein 4 [Glycine soja]
12 Hb_003032_090 0.2783797068 - - hypothetical protein POPTR_0018s06450g [Populus trichocarpa]
13 Hb_004880_090 0.2834772285 - - hypothetical protein POPTR_0011s01952g [Populus trichocarpa]
14 Hb_003427_080 0.2862044368 - - PREDICTED: probable alanine--tRNA ligase, chloroplastic [Jatropha curcas]
15 Hb_162094_010 0.2877361282 - - RNA polymerase alpha subunit [Hevea brasiliensis]
16 Hb_003077_130 0.2892149352 - - hypothetical protein JCGZ_22476 [Jatropha curcas]
17 Hb_004785_070 0.2895285821 - - PREDICTED: serine/threonine-protein kinase HT1-like isoform X2 [Jatropha curcas]
18 Hb_024714_080 0.290223173 - - PREDICTED: translocase of chloroplast 159, chloroplastic [Jatropha curcas]
19 Hb_000367_140 0.2913994121 - - S-locus-specific glycoprotein S6 precursor, putative [Ricinus communis]
20 Hb_003687_160 0.2935370031 - - Ran GTPase binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_004459_070 Hb_004459_070 Hb_007313_060 Hb_007313_060 Hb_004459_070--Hb_007313_060 Hb_007810_070 Hb_007810_070 Hb_004459_070--Hb_007810_070 Hb_001488_260 Hb_001488_260 Hb_004459_070--Hb_001488_260 Hb_005656_150 Hb_005656_150 Hb_004459_070--Hb_005656_150 Hb_023675_030 Hb_023675_030 Hb_004459_070--Hb_023675_030 Hb_000395_090 Hb_000395_090 Hb_004459_070--Hb_000395_090 Hb_007313_060--Hb_000395_090 Hb_008092_080 Hb_008092_080 Hb_007313_060--Hb_008092_080 Hb_003427_080 Hb_003427_080 Hb_007313_060--Hb_003427_080 Hb_000053_120 Hb_000053_120 Hb_007313_060--Hb_000053_120 Hb_024714_080 Hb_024714_080 Hb_007313_060--Hb_024714_080 Hb_003077_130 Hb_003077_130 Hb_007313_060--Hb_003077_130 Hb_003032_090 Hb_003032_090 Hb_007810_070--Hb_003032_090 Hb_001338_150 Hb_001338_150 Hb_007810_070--Hb_001338_150 Hb_062192_020 Hb_062192_020 Hb_007810_070--Hb_062192_020 Hb_004713_020 Hb_004713_020 Hb_007810_070--Hb_004713_020 Hb_062192_010 Hb_062192_010 Hb_007810_070--Hb_062192_010 Hb_162094_010 Hb_162094_010 Hb_007810_070--Hb_162094_010 Hb_000703_300 Hb_000703_300 Hb_001488_260--Hb_000703_300 Hb_001488_260--Hb_007313_060 Hb_002276_070 Hb_002276_070 Hb_001488_260--Hb_002276_070 Hb_000463_030 Hb_000463_030 Hb_001488_260--Hb_000463_030 Hb_003038_150 Hb_003038_150 Hb_001488_260--Hb_003038_150 Hb_000012_440 Hb_000012_440 Hb_005656_150--Hb_000012_440 Hb_005656_150--Hb_003032_090 Hb_004987_030 Hb_004987_030 Hb_005656_150--Hb_004987_030 Hb_005656_150--Hb_001338_150 Hb_032733_010 Hb_032733_010 Hb_005656_150--Hb_032733_010 Hb_005656_150--Hb_008092_080 Hb_023675_030--Hb_003038_150 Hb_001461_020 Hb_001461_020 Hb_023675_030--Hb_001461_020 Hb_002249_210 Hb_002249_210 Hb_023675_030--Hb_002249_210 Hb_023675_030--Hb_007313_060 Hb_023675_030--Hb_000703_300 Hb_023675_030--Hb_032733_010 Hb_000395_090--Hb_000053_120 Hb_072212_010 Hb_072212_010 Hb_000395_090--Hb_072212_010 Hb_000395_090--Hb_003427_080 Hb_005618_150 Hb_005618_150 Hb_000395_090--Hb_005618_150 Hb_001307_040 Hb_001307_040 Hb_000395_090--Hb_001307_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0508567 0.035282 0.0234627 0.00783629 0.0394165 0.00890246
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0231198 0.0181912 0 0 0.307357

CAGE analysis