Hb_183574_010

Information

Type -
Description -
Location Contig183574: 17-568
Sequence    

Annotation

kegg
ID pda:103696607
description uncharacterized LOC103696607
nr
ID XP_008776509.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
swissprot
ID -
description -
trembl
ID A5B3J2
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_040272 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_183574_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
2 Hb_001709_130 0.2376285172 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
3 Hb_021068_010 0.2414854229 - - PREDICTED: MADS-box transcription factor 23-like isoform X1 [Jatropha curcas]
4 Hb_004361_020 0.2459624756 - - PREDICTED: uncharacterized protein LOC102625775 [Citrus sinensis]
5 Hb_005989_010 0.2617166252 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
6 Hb_047661_010 0.2675447965 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
7 Hb_005241_020 0.2715819399 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
8 Hb_009973_020 0.2864354342 - - PREDICTED: uncharacterized protein LOC104889111 [Beta vulgaris subsp. vulgaris]
9 Hb_001965_020 0.2882432833 - - hypothetical protein B456_013G048700 [Gossypium raimondii]
10 Hb_023323_010 0.2901068223 - - PREDICTED: uncharacterized protein LOC104901296 [Beta vulgaris subsp. vulgaris]
11 Hb_062741_010 0.2929205993 - - -
12 Hb_032920_100 0.2940980922 - - hypothetical protein POPTR_0002s00940g, partial [Populus trichocarpa]
13 Hb_178884_010 0.298653734 - - putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
14 Hb_001019_120 0.304841062 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
15 Hb_010775_050 0.3050799148 - - -
16 Hb_000236_090 0.3093493091 - - hypothetical protein EUGRSUZ_H00030 [Eucalyptus grandis]
17 Hb_005081_040 0.3148998885 - - -
18 Hb_036702_010 0.3262547009 - - phosphoprotein phosphatase, putative [Ricinus communis]
19 Hb_007416_370 0.3276344527 - - conserved hypothetical protein [Ricinus communis]
20 Hb_004449_240 0.3284042401 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]

Gene co-expression network

sample Hb_183574_010 Hb_183574_010 Hb_001709_130 Hb_001709_130 Hb_183574_010--Hb_001709_130 Hb_021068_010 Hb_021068_010 Hb_183574_010--Hb_021068_010 Hb_004361_020 Hb_004361_020 Hb_183574_010--Hb_004361_020 Hb_005989_010 Hb_005989_010 Hb_183574_010--Hb_005989_010 Hb_047661_010 Hb_047661_010 Hb_183574_010--Hb_047661_010 Hb_005241_020 Hb_005241_020 Hb_183574_010--Hb_005241_020 Hb_000078_170 Hb_000078_170 Hb_001709_130--Hb_000078_170 Hb_000330_080 Hb_000330_080 Hb_001709_130--Hb_000330_080 Hb_011639_150 Hb_011639_150 Hb_001709_130--Hb_011639_150 Hb_004884_020 Hb_004884_020 Hb_001709_130--Hb_004884_020 Hb_001009_100 Hb_001009_100 Hb_001709_130--Hb_001009_100 Hb_001709_130--Hb_004361_020 Hb_001019_120 Hb_001019_120 Hb_021068_010--Hb_001019_120 Hb_032920_100 Hb_032920_100 Hb_021068_010--Hb_032920_100 Hb_009973_020 Hb_009973_020 Hb_021068_010--Hb_009973_020 Hb_021068_010--Hb_004361_020 Hb_021068_010--Hb_001709_130 Hb_004361_020--Hb_001019_120 Hb_036702_010 Hb_036702_010 Hb_004361_020--Hb_036702_010 Hb_000236_090 Hb_000236_090 Hb_004361_020--Hb_000236_090 Hb_005989_010--Hb_047661_010 Hb_023323_010 Hb_023323_010 Hb_005989_010--Hb_023323_010 Hb_005989_010--Hb_009973_020 Hb_003529_220 Hb_003529_220 Hb_005989_010--Hb_003529_220 Hb_001899_010 Hb_001899_010 Hb_005989_010--Hb_001899_010 Hb_001159_210 Hb_001159_210 Hb_005989_010--Hb_001159_210 Hb_047661_010--Hb_001159_210 Hb_047661_010--Hb_009973_020 Hb_047661_010--Hb_023323_010 Hb_004460_020 Hb_004460_020 Hb_047661_010--Hb_004460_020 Hb_002374_560 Hb_002374_560 Hb_047661_010--Hb_002374_560 Hb_062741_010 Hb_062741_010 Hb_005241_020--Hb_062741_010 Hb_001969_050 Hb_001969_050 Hb_005241_020--Hb_001969_050 Hb_004041_010 Hb_004041_010 Hb_005241_020--Hb_004041_010 Hb_007044_280 Hb_007044_280 Hb_005241_020--Hb_007044_280 Hb_018591_040 Hb_018591_040 Hb_005241_020--Hb_018591_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.187947 0.0419131 0.0376128 0.0509438 1.10641 1.75213
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.259948 0.687161

CAGE analysis