Hb_005241_020

Information

Type -
Description -
Location Contig5241: 40964-42013
Sequence    

Annotation

kegg
ID pda:103696607
description uncharacterized LOC103696607
nr
ID XP_008776509.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
swissprot
ID -
description -
trembl
ID A0A061EW79
description Uncharacterized protein OS=Theobroma cacao GN=TCM_024420 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005241_020 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
2 Hb_062741_010 0.2540261504 - - -
3 Hb_183574_010 0.2715819399 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
4 Hb_001969_050 0.2830057952 - - PREDICTED: uncharacterized protein LOC105634920 isoform X1 [Jatropha curcas]
5 Hb_004041_010 0.2849807719 - - conserved hypothetical protein [Ricinus communis]
6 Hb_007044_280 0.2879756474 - - PREDICTED: uncharacterized protein LOC105123357 [Populus euphratica]
7 Hb_018591_040 0.2893676561 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
8 Hb_007659_010 0.3039071702 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Jatropha curcas]
9 Hb_006995_020 0.3068977455 - - hypothetical protein glysoja_017339 [Glycine soja]
10 Hb_001160_010 0.309324533 - - -
11 Hb_028755_010 0.3102173752 - - PREDICTED: uncharacterized protein LOC104894399 [Beta vulgaris subsp. vulgaris]
12 Hb_006674_020 0.3203459052 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_004361_020 0.326599193 - - PREDICTED: uncharacterized protein LOC102625775 [Citrus sinensis]
14 Hb_164370_010 0.3338807068 - - -
15 Hb_002224_050 0.3342673176 - - PREDICTED: uncharacterized protein LOC104764484 isoform X1 [Camelina sativa]
16 Hb_118014_010 0.3446834224 - - PREDICTED: uncharacterized protein LOC104214283 [Nicotiana sylvestris]
17 Hb_027380_250 0.3448635226 - - Isoflavone reductase, putative [Ricinus communis]
18 Hb_184746_010 0.3501169025 - - HSP20-like chaperones superfamily protein [Theobroma cacao]
19 Hb_004947_070 0.3511345074 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
20 Hb_001031_050 0.3514856169 - - -

Gene co-expression network

sample Hb_005241_020 Hb_005241_020 Hb_062741_010 Hb_062741_010 Hb_005241_020--Hb_062741_010 Hb_183574_010 Hb_183574_010 Hb_005241_020--Hb_183574_010 Hb_001969_050 Hb_001969_050 Hb_005241_020--Hb_001969_050 Hb_004041_010 Hb_004041_010 Hb_005241_020--Hb_004041_010 Hb_007044_280 Hb_007044_280 Hb_005241_020--Hb_007044_280 Hb_018591_040 Hb_018591_040 Hb_005241_020--Hb_018591_040 Hb_004195_260 Hb_004195_260 Hb_062741_010--Hb_004195_260 Hb_153142_010 Hb_153142_010 Hb_062741_010--Hb_153142_010 Hb_188319_010 Hb_188319_010 Hb_062741_010--Hb_188319_010 Hb_062741_010--Hb_183574_010 Hb_001160_010 Hb_001160_010 Hb_062741_010--Hb_001160_010 Hb_001709_130 Hb_001709_130 Hb_183574_010--Hb_001709_130 Hb_021068_010 Hb_021068_010 Hb_183574_010--Hb_021068_010 Hb_004361_020 Hb_004361_020 Hb_183574_010--Hb_004361_020 Hb_005989_010 Hb_005989_010 Hb_183574_010--Hb_005989_010 Hb_047661_010 Hb_047661_010 Hb_183574_010--Hb_047661_010 Hb_101151_030 Hb_101151_030 Hb_001969_050--Hb_101151_030 Hb_053582_010 Hb_053582_010 Hb_001969_050--Hb_053582_010 Hb_144552_010 Hb_144552_010 Hb_001969_050--Hb_144552_010 Hb_000951_050 Hb_000951_050 Hb_001969_050--Hb_000951_050 Hb_003623_020 Hb_003623_020 Hb_001969_050--Hb_003623_020 Hb_015930_010 Hb_015930_010 Hb_001969_050--Hb_015930_010 Hb_012253_020 Hb_012253_020 Hb_004041_010--Hb_012253_020 Hb_007659_010 Hb_007659_010 Hb_004041_010--Hb_007659_010 Hb_002224_050 Hb_002224_050 Hb_004041_010--Hb_002224_050 Hb_028751_010 Hb_028751_010 Hb_004041_010--Hb_028751_010 Hb_004041_010--Hb_007044_280 Hb_004041_010--Hb_018591_040 Hb_007044_280--Hb_018591_040 Hb_006995_020 Hb_006995_020 Hb_007044_280--Hb_006995_020 Hb_007044_280--Hb_007659_010 Hb_007044_280--Hb_002224_050 Hb_041476_010 Hb_041476_010 Hb_007044_280--Hb_041476_010 Hb_018591_040--Hb_006995_020 Hb_018591_040--Hb_007659_010 Hb_018591_040--Hb_002224_050 Hb_018591_040--Hb_041476_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0331649 0.0442386 0 0 0.207133 1.28964
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0771277 0.676229

CAGE analysis