Hb_036702_010

Information

Type -
Description -
Location Contig36702: 3-479
Sequence    

Annotation

kegg
ID rcu:RCOM_1429720
description phosphoprotein phosphatase, putative (EC:3.1.3.16)
nr
ID XP_002512305.1
description phosphoprotein phosphatase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9REY6
description Phosphoprotein phosphatase, putative OS=Ricinus communis GN=RCOM_1429720 PE=4 SV=1
Gene Ontology
ID GO:0000166
description nb-arc domain-containing disease resistance

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_036702_010 0.0 - - phosphoprotein phosphatase, putative [Ricinus communis]
2 Hb_001019_120 0.1365745831 - - PREDICTED: uncharacterized protein LOC105639315 [Jatropha curcas]
3 Hb_001014_130 0.1474716669 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
4 Hb_002742_070 0.1483918957 - - PREDICTED: villin-4-like [Jatropha curcas]
5 Hb_011953_030 0.1800331951 transcription factor TF Family: C2C2-Dof hypothetical protein POPTR_0003s14450g [Populus trichocarpa]
6 Hb_000330_160 0.1822492271 - - hypothetical protein JCGZ_04462 [Jatropha curcas]
7 Hb_000062_060 0.1840266182 transcription factor TF Family: Orphans multi-sensor hybrid histidine kinase [Plautia stali symbiont]
8 Hb_000927_040 0.1843004308 - - -
9 Hb_000486_060 0.1915561962 - - PREDICTED: immediate early response 3-interacting protein 1-like isoform X2 [Glycine max]
10 Hb_002815_060 0.1969887343 - - hypothetical protein B456_002G110500 [Gossypium raimondii]
11 Hb_000424_150 0.1991396444 - - PREDICTED: copper transporter 5.1-like [Jatropha curcas]
12 Hb_005144_030 0.2005802404 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
13 Hb_001508_020 0.2009165666 - - myosin vIII, putative [Ricinus communis]
14 Hb_178041_010 0.2019812996 - - PREDICTED: signal peptide peptidase-like 2 [Populus euphratica]
15 Hb_000487_220 0.2042455403 - - eukaryotic translation elongation factor, putative [Ricinus communis]
16 Hb_001718_050 0.2059011371 - - PREDICTED: putative ribonuclease H protein At1g65750 [Brassica rapa]
17 Hb_008029_020 0.2100256588 - - PREDICTED: uncharacterized protein LOC105631777 [Jatropha curcas]
18 Hb_003029_130 0.2122408017 - - carboxypeptidase regulatory region-containingprotein, putative [Ricinus communis]
19 Hb_004657_090 0.2128647952 - - Chromosome-associated kinesin KLP1, putative [Ricinus communis]
20 Hb_067776_020 0.2133011493 - - PREDICTED: signal recognition particle 54 kDa protein, chloroplastic [Jatropha curcas]

Gene co-expression network

sample Hb_036702_010 Hb_036702_010 Hb_001019_120 Hb_001019_120 Hb_036702_010--Hb_001019_120 Hb_001014_130 Hb_001014_130 Hb_036702_010--Hb_001014_130 Hb_002742_070 Hb_002742_070 Hb_036702_010--Hb_002742_070 Hb_011953_030 Hb_011953_030 Hb_036702_010--Hb_011953_030 Hb_000330_160 Hb_000330_160 Hb_036702_010--Hb_000330_160 Hb_000062_060 Hb_000062_060 Hb_036702_010--Hb_000062_060 Hb_067776_020 Hb_067776_020 Hb_001019_120--Hb_067776_020 Hb_002159_030 Hb_002159_030 Hb_001019_120--Hb_002159_030 Hb_004324_240 Hb_004324_240 Hb_001019_120--Hb_004324_240 Hb_007933_020 Hb_007933_020 Hb_001019_120--Hb_007933_020 Hb_004987_070 Hb_004987_070 Hb_001019_120--Hb_004987_070 Hb_000424_150 Hb_000424_150 Hb_001014_130--Hb_000424_150 Hb_001014_130--Hb_000062_060 Hb_178884_010 Hb_178884_010 Hb_001014_130--Hb_178884_010 Hb_000732_170 Hb_000732_170 Hb_001014_130--Hb_000732_170 Hb_000221_120 Hb_000221_120 Hb_001014_130--Hb_000221_120 Hb_002815_060 Hb_002815_060 Hb_002742_070--Hb_002815_060 Hb_178041_010 Hb_178041_010 Hb_002742_070--Hb_178041_010 Hb_003157_030 Hb_003157_030 Hb_002742_070--Hb_003157_030 Hb_010128_120 Hb_010128_120 Hb_002742_070--Hb_010128_120 Hb_002742_070--Hb_000330_160 Hb_002742_070--Hb_011953_030 Hb_011953_030--Hb_000330_160 Hb_000997_410 Hb_000997_410 Hb_011953_030--Hb_000997_410 Hb_001040_120 Hb_001040_120 Hb_011953_030--Hb_001040_120 Hb_011953_030--Hb_002815_060 Hb_003436_050 Hb_003436_050 Hb_011953_030--Hb_003436_050 Hb_005144_030 Hb_005144_030 Hb_000330_160--Hb_005144_030 Hb_003814_030 Hb_003814_030 Hb_000330_160--Hb_003814_030 Hb_001031_040 Hb_001031_040 Hb_000330_160--Hb_001031_040 Hb_000136_190 Hb_000136_190 Hb_000330_160--Hb_000136_190 Hb_037793_010 Hb_037793_010 Hb_000062_060--Hb_037793_010 Hb_000062_060--Hb_005144_030 Hb_000062_060--Hb_000136_190 Hb_011206_010 Hb_011206_010 Hb_000062_060--Hb_011206_010 Hb_001508_020 Hb_001508_020 Hb_000062_060--Hb_001508_020 Hb_000062_060--Hb_002815_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.88369 2.67042 2.72005 5.16831 7.42981 20.0775
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.580681 0.228075 0.764996 5.57286 6.95854

CAGE analysis