Hb_178884_010

Information

Type -
Description -
Location Contig178884: 498-1166
Sequence    

Annotation

kegg
ID pop:POPTR_0005s04430g
description putative disease resistance gene NBS-LRR family protein
nr
ID XP_006382685.1
description putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5GGB3
description Putative disease resistance gene NBS-LRR family protein OS=Populus trichocarpa GN=POPTR_0005s04430g PE=4 SV=1
Gene Ontology
ID GO:0000166
description disease resistance gene nbs-lrr family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_178884_010 0.0 - - putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
2 Hb_001014_130 0.2079514619 - - PREDICTED: uncharacterized protein LOC105647301 [Jatropha curcas]
3 Hb_036702_010 0.2297629778 - - phosphoprotein phosphatase, putative [Ricinus communis]
4 Hb_000236_090 0.249717681 - - hypothetical protein EUGRSUZ_H00030 [Eucalyptus grandis]
5 Hb_003238_030 0.2504374276 - - hypothetical protein EUGRSUZ_I00356 [Eucalyptus grandis]
6 Hb_002299_050 0.2515557977 - - PREDICTED: chalcone--flavonone isomerase isoform X1 [Pyrus x bretschneideri]
7 Hb_009848_010 0.2664820827 - - putative acyl-activating enzyme 16, chloroplastic -like protein [Gossypium arboreum]
8 Hb_135442_010 0.2769453112 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
9 Hb_004361_020 0.2769943567 - - PREDICTED: uncharacterized protein LOC102625775 [Citrus sinensis]
10 Hb_058702_020 0.2853105172 - - PREDICTED: uncharacterized protein LOC104604814 [Nelumbo nucifera]
11 Hb_012180_030 0.2872651513 - - unnamed protein product [Vitis vinifera]
12 Hb_005144_030 0.2874487928 - - PREDICTED: alpha-L-fucosidase 1 [Jatropha curcas]
13 Hb_084470_010 0.2875765945 - - Disease resistance protein RPS5, putative [Ricinus communis]
14 Hb_002742_070 0.2946851943 - - PREDICTED: villin-4-like [Jatropha curcas]
15 Hb_000189_420 0.2952538529 - - PREDICTED: uncharacterized protein LOC105647665 [Jatropha curcas]
16 Hb_183574_010 0.298653734 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
17 Hb_000927_040 0.3007184964 - - -
18 Hb_004920_010 0.3022127382 - - PREDICTED: universal stress protein A-like protein [Jatropha curcas]
19 Hb_007348_040 0.3026609545 transcription factor TF Family: PHD hypothetical protein RCOM_1314010 [Ricinus communis]
20 Hb_000330_160 0.3037057067 - - hypothetical protein JCGZ_04462 [Jatropha curcas]

Gene co-expression network

sample Hb_178884_010 Hb_178884_010 Hb_001014_130 Hb_001014_130 Hb_178884_010--Hb_001014_130 Hb_036702_010 Hb_036702_010 Hb_178884_010--Hb_036702_010 Hb_000236_090 Hb_000236_090 Hb_178884_010--Hb_000236_090 Hb_003238_030 Hb_003238_030 Hb_178884_010--Hb_003238_030 Hb_002299_050 Hb_002299_050 Hb_178884_010--Hb_002299_050 Hb_009848_010 Hb_009848_010 Hb_178884_010--Hb_009848_010 Hb_001014_130--Hb_036702_010 Hb_000424_150 Hb_000424_150 Hb_001014_130--Hb_000424_150 Hb_000062_060 Hb_000062_060 Hb_001014_130--Hb_000062_060 Hb_000732_170 Hb_000732_170 Hb_001014_130--Hb_000732_170 Hb_000221_120 Hb_000221_120 Hb_001014_130--Hb_000221_120 Hb_001019_120 Hb_001019_120 Hb_036702_010--Hb_001019_120 Hb_002742_070 Hb_002742_070 Hb_036702_010--Hb_002742_070 Hb_011953_030 Hb_011953_030 Hb_036702_010--Hb_011953_030 Hb_000330_160 Hb_000330_160 Hb_036702_010--Hb_000330_160 Hb_036702_010--Hb_000062_060 Hb_010128_120 Hb_010128_120 Hb_000236_090--Hb_010128_120 Hb_000504_150 Hb_000504_150 Hb_000236_090--Hb_000504_150 Hb_007348_040 Hb_007348_040 Hb_000236_090--Hb_007348_040 Hb_001009_100 Hb_001009_100 Hb_000236_090--Hb_001009_100 Hb_002084_040 Hb_002084_040 Hb_000236_090--Hb_002084_040 Hb_000108_080 Hb_000108_080 Hb_000236_090--Hb_000108_080 Hb_000380_200 Hb_000380_200 Hb_003238_030--Hb_000380_200 Hb_000295_010 Hb_000295_010 Hb_003238_030--Hb_000295_010 Hb_000189_420 Hb_000189_420 Hb_003238_030--Hb_000189_420 Hb_006810_070 Hb_006810_070 Hb_003238_030--Hb_006810_070 Hb_000640_150 Hb_000640_150 Hb_003238_030--Hb_000640_150 Hb_001587_010 Hb_001587_010 Hb_002299_050--Hb_001587_010 Hb_065525_030 Hb_065525_030 Hb_002299_050--Hb_065525_030 Hb_000984_050 Hb_000984_050 Hb_002299_050--Hb_000984_050 Hb_001278_070 Hb_001278_070 Hb_002299_050--Hb_001278_070 Hb_005273_040 Hb_005273_040 Hb_002299_050--Hb_005273_040 Hb_002407_080 Hb_002407_080 Hb_002299_050--Hb_002407_080 Hb_009848_010--Hb_001587_010 Hb_009848_030 Hb_009848_030 Hb_009848_010--Hb_009848_030 Hb_002477_220 Hb_002477_220 Hb_009848_010--Hb_002477_220 Hb_012180_030 Hb_012180_030 Hb_009848_010--Hb_012180_030 Hb_002235_140 Hb_002235_140 Hb_009848_010--Hb_002235_140 Hb_000735_170 Hb_000735_170 Hb_009848_010--Hb_000735_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.35517 0.138771 0.0299942 0.105777 0.362413 1.10727
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.663191 0.266532

CAGE analysis