Hb_000380_200

Information

Type -
Description -
Location Contig380: 199875-200453
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000380_200 0.0 - - -
2 Hb_003238_030 0.1712606471 - - hypothetical protein EUGRSUZ_I00356 [Eucalyptus grandis]
3 Hb_001678_020 0.2646838183 - - PREDICTED: uncharacterized protein LOC105160092 [Sesamum indicum]
4 Hb_000103_360 0.2660345035 - - -
5 Hb_000295_010 0.2721976545 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_000384_040 0.2900924321 - - PREDICTED: uncharacterized protein LOC105640093 [Jatropha curcas]
7 Hb_002299_050 0.2908938702 - - PREDICTED: chalcone--flavonone isomerase isoform X1 [Pyrus x bretschneideri]
8 Hb_000189_420 0.2937013262 - - PREDICTED: uncharacterized protein LOC105647665 [Jatropha curcas]
9 Hb_000827_080 0.2957104303 - - catalytic, putative [Ricinus communis]
10 Hb_000504_090 0.3003374615 - - PREDICTED: titin isoform X10 [Jatropha curcas]
11 Hb_000101_160 0.3026921686 - - PREDICTED: uncharacterized protein LOC105133607 isoform X1 [Populus euphratica]
12 Hb_006810_070 0.3045793409 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
13 Hb_004342_030 0.307671154 - - phosphofructokinase [Hevea brasiliensis]
14 Hb_003656_120 0.3090424966 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-3-like [Jatropha curcas]
15 Hb_011639_010 0.3136953753 - - -
16 Hb_007101_220 0.3148150743 - - Gibberellin-regulated protein 3 precursor, putative [Ricinus communis]
17 Hb_001329_240 0.3156234223 - - hypothetical protein POPTR_0002s18920g [Populus trichocarpa]
18 Hb_000021_100 0.3170325103 - - -
19 Hb_178884_010 0.3171929738 - - putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
20 Hb_000189_230 0.3193484024 - - Auxin-induced protein [Aegilops tauschii]

Gene co-expression network

sample Hb_000380_200 Hb_000380_200 Hb_003238_030 Hb_003238_030 Hb_000380_200--Hb_003238_030 Hb_001678_020 Hb_001678_020 Hb_000380_200--Hb_001678_020 Hb_000103_360 Hb_000103_360 Hb_000380_200--Hb_000103_360 Hb_000295_010 Hb_000295_010 Hb_000380_200--Hb_000295_010 Hb_000384_040 Hb_000384_040 Hb_000380_200--Hb_000384_040 Hb_002299_050 Hb_002299_050 Hb_000380_200--Hb_002299_050 Hb_003238_030--Hb_000295_010 Hb_178884_010 Hb_178884_010 Hb_003238_030--Hb_178884_010 Hb_000189_420 Hb_000189_420 Hb_003238_030--Hb_000189_420 Hb_006810_070 Hb_006810_070 Hb_003238_030--Hb_006810_070 Hb_000640_150 Hb_000640_150 Hb_003238_030--Hb_000640_150 Hb_000101_160 Hb_000101_160 Hb_001678_020--Hb_000101_160 Hb_010620_010 Hb_010620_010 Hb_001678_020--Hb_010620_010 Hb_001678_020--Hb_000103_360 Hb_023323_010 Hb_023323_010 Hb_001678_020--Hb_023323_010 Hb_002233_090 Hb_002233_090 Hb_001678_020--Hb_002233_090 Hb_001678_020--Hb_000384_040 Hb_006901_040 Hb_006901_040 Hb_000103_360--Hb_006901_040 Hb_000103_360--Hb_002233_090 Hb_000453_080 Hb_000453_080 Hb_000103_360--Hb_000453_080 Hb_000025_310 Hb_000025_310 Hb_000103_360--Hb_000025_310 Hb_005914_090 Hb_005914_090 Hb_000103_360--Hb_005914_090 Hb_005389_110 Hb_005389_110 Hb_000295_010--Hb_005389_110 Hb_018344_010 Hb_018344_010 Hb_000295_010--Hb_018344_010 Hb_116125_010 Hb_116125_010 Hb_000295_010--Hb_116125_010 Hb_003656_120 Hb_003656_120 Hb_000295_010--Hb_003656_120 Hb_000384_040--Hb_002233_090 Hb_002400_100 Hb_002400_100 Hb_000384_040--Hb_002400_100 Hb_087340_010 Hb_087340_010 Hb_000384_040--Hb_087340_010 Hb_000384_040--Hb_000025_310 Hb_103494_010 Hb_103494_010 Hb_000384_040--Hb_103494_010 Hb_001587_010 Hb_001587_010 Hb_002299_050--Hb_001587_010 Hb_065525_030 Hb_065525_030 Hb_002299_050--Hb_065525_030 Hb_000984_050 Hb_000984_050 Hb_002299_050--Hb_000984_050 Hb_001278_070 Hb_001278_070 Hb_002299_050--Hb_001278_070 Hb_005273_040 Hb_005273_040 Hb_002299_050--Hb_005273_040 Hb_002407_080 Hb_002407_080 Hb_002299_050--Hb_002407_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.52685 2.2338 1.15539 0 15.9174 14.6066
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.220376 0.996106 12.4546 0.362635

CAGE analysis