Hb_006810_070

Information

Type -
Description -
Location Contig6810: 43172-44706
Sequence    

Annotation

kegg
ID rcu:RCOM_1113060
description leucine-rich repeat receptor protein kinase exs precursor, putative (EC:1.3.1.74)
nr
ID XP_002531725.1
description leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T0F6
description Leucine-rich repeat receptor protein kinase exs, putative OS=Ricinus communis GN=RCOM_1113060 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006810_070 0.0 - - leucine-rich repeat receptor protein kinase exs precursor, putative [Ricinus communis]
2 Hb_007101_220 0.1936875265 - - Gibberellin-regulated protein 3 precursor, putative [Ricinus communis]
3 Hb_000123_250 0.2418612453 - - PREDICTED: protein UPSTREAM OF FLC-like [Jatropha curcas]
4 Hb_003238_030 0.2598089986 - - hypothetical protein EUGRSUZ_I00356 [Eucalyptus grandis]
5 Hb_010565_020 0.2741471267 - - -
6 Hb_030827_050 0.2818580032 - - hypothetical protein CISIN_1g040641mg, partial [Citrus sinensis]
7 Hb_006083_060 0.2923299324 - - PREDICTED: zinc-binding alcohol dehydrogenase domain-containing protein 2-like [Jatropha curcas]
8 Hb_116125_010 0.2991075915 - - PREDICTED: probable leucine-rich repeat receptor-like protein kinase At1g35710-like [Citrus sinensis]
9 Hb_001952_130 0.3017361196 - - PREDICTED: protein EXORDIUM-like 2 [Jatropha curcas]
10 Hb_000380_200 0.3045793409 - - -
11 Hb_001675_120 0.3097623029 - - PREDICTED: glyoxylate/hydroxypyruvate reductase A HPR2 [Jatropha curcas]
12 Hb_000295_010 0.3102173781 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
13 Hb_000061_380 0.3116578831 - - conserved hypothetical protein [Ricinus communis]
14 Hb_022250_120 0.331365518 - - PREDICTED: uncharacterized protein LOC105648689 [Jatropha curcas]
15 Hb_000197_050 0.3438402231 - - AGPase large subunit protein [Hevea brasiliensis]
16 Hb_002259_040 0.3492321765 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
17 Hb_002783_200 0.3525582819 - - PREDICTED: neurofilament heavy polypeptide-like [Jatropha curcas]
18 Hb_005839_100 0.3567872502 - - PREDICTED: APO protein 1, chloroplastic isoform X3 [Jatropha curcas]
19 Hb_002299_050 0.3580144793 - - PREDICTED: chalcone--flavonone isomerase isoform X1 [Pyrus x bretschneideri]
20 Hb_164458_010 0.3590793718 - - PREDICTED: protein ACCUMULATION AND REPLICATION OF CHLOROPLASTS 6, chloroplastic isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_006810_070 Hb_006810_070 Hb_007101_220 Hb_007101_220 Hb_006810_070--Hb_007101_220 Hb_000123_250 Hb_000123_250 Hb_006810_070--Hb_000123_250 Hb_003238_030 Hb_003238_030 Hb_006810_070--Hb_003238_030 Hb_010565_020 Hb_010565_020 Hb_006810_070--Hb_010565_020 Hb_030827_050 Hb_030827_050 Hb_006810_070--Hb_030827_050 Hb_006083_060 Hb_006083_060 Hb_006810_070--Hb_006083_060 Hb_007101_220--Hb_030827_050 Hb_000905_150 Hb_000905_150 Hb_007101_220--Hb_000905_150 Hb_003117_050 Hb_003117_050 Hb_007101_220--Hb_003117_050 Hb_007101_220--Hb_003238_030 Hb_151497_010 Hb_151497_010 Hb_007101_220--Hb_151497_010 Hb_000123_250--Hb_010565_020 Hb_001414_130 Hb_001414_130 Hb_000123_250--Hb_001414_130 Hb_003311_050 Hb_003311_050 Hb_000123_250--Hb_003311_050 Hb_000123_250--Hb_003238_030 Hb_000197_050 Hb_000197_050 Hb_000123_250--Hb_000197_050 Hb_000380_200 Hb_000380_200 Hb_003238_030--Hb_000380_200 Hb_000295_010 Hb_000295_010 Hb_003238_030--Hb_000295_010 Hb_178884_010 Hb_178884_010 Hb_003238_030--Hb_178884_010 Hb_000189_420 Hb_000189_420 Hb_003238_030--Hb_000189_420 Hb_000640_150 Hb_000640_150 Hb_003238_030--Hb_000640_150 Hb_010447_020 Hb_010447_020 Hb_010565_020--Hb_010447_020 Hb_164458_010 Hb_164458_010 Hb_010565_020--Hb_164458_010 Hb_033926_010 Hb_033926_010 Hb_010565_020--Hb_033926_010 Hb_010565_020--Hb_003238_030 Hb_030827_050--Hb_151497_010 Hb_000908_010 Hb_000908_010 Hb_030827_050--Hb_000908_010 Hb_001545_230 Hb_001545_230 Hb_030827_050--Hb_001545_230 Hb_118346_010 Hb_118346_010 Hb_030827_050--Hb_118346_010 Hb_004525_070 Hb_004525_070 Hb_006083_060--Hb_004525_070 Hb_001952_130 Hb_001952_130 Hb_006083_060--Hb_001952_130 Hb_000106_020 Hb_000106_020 Hb_006083_060--Hb_000106_020 Hb_007333_030 Hb_007333_030 Hb_006083_060--Hb_007333_030 Hb_000077_220 Hb_000077_220 Hb_006083_060--Hb_000077_220 Hb_003097_080 Hb_003097_080 Hb_006083_060--Hb_003097_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.22697 0.116475 0.265661 0 0.451607 0.212397
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.658519 0

CAGE analysis