Hb_003117_050

Information

Type -
Description -
Location Contig3117: 47330-48140
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID GO:0003677
description protein rcc2 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003117_050 0.0 - - -
2 Hb_011468_010 0.2209047969 - - hypothetical protein B456_008G198600 [Gossypium raimondii]
3 Hb_007101_220 0.2888735907 - - Gibberellin-regulated protein 3 precursor, putative [Ricinus communis]
4 Hb_000905_150 0.3063847772 - - Cytochrome P450 [Theobroma cacao]
5 Hb_046198_020 0.3101946226 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000076_170 0.3154772993 - - hypothetical protein JCGZ_00832 [Jatropha curcas]
7 Hb_003581_160 0.3335189931 - - -
8 Hb_013394_090 0.340972742 - - conserved hypothetical protein [Ricinus communis]
9 Hb_111985_020 0.341096983 - - -
10 Hb_002659_100 0.3411463767 - - hypothetical protein OsI_37193 [Oryza sativa Indica Group]
11 Hb_000640_010 0.34131315 - - PREDICTED: histidine kinase CKI1 [Jatropha curcas]
12 Hb_011639_140 0.3414035663 transcription factor TF Family: M-type hypothetical protein JCGZ_09931 [Jatropha curcas]
13 Hb_011010_010 0.3414210624 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_001013_020 0.3425215192 - - conserved hypothetical protein [Ricinus communis]
15 Hb_000740_030 0.3426783914 - - hypothetical protein VITISV_038271 [Vitis vinifera]
16 Hb_001329_240 0.3427272421 - - hypothetical protein POPTR_0002s18920g [Populus trichocarpa]
17 Hb_066415_010 0.3428358128 - - -
18 Hb_006642_010 0.3433798544 - - -
19 Hb_002588_020 0.3450704312 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
20 Hb_020111_010 0.3501845807 - - PREDICTED: uncharacterized protein LOC102661177 [Glycine max]

Gene co-expression network

sample Hb_003117_050 Hb_003117_050 Hb_011468_010 Hb_011468_010 Hb_003117_050--Hb_011468_010 Hb_007101_220 Hb_007101_220 Hb_003117_050--Hb_007101_220 Hb_000905_150 Hb_000905_150 Hb_003117_050--Hb_000905_150 Hb_046198_020 Hb_046198_020 Hb_003117_050--Hb_046198_020 Hb_000076_170 Hb_000076_170 Hb_003117_050--Hb_000076_170 Hb_003581_160 Hb_003581_160 Hb_003117_050--Hb_003581_160 Hb_011468_010--Hb_003581_160 Hb_011468_010--Hb_046198_020 Hb_000796_060 Hb_000796_060 Hb_011468_010--Hb_000796_060 Hb_013394_090 Hb_013394_090 Hb_011468_010--Hb_013394_090 Hb_000046_230 Hb_000046_230 Hb_011468_010--Hb_000046_230 Hb_006810_070 Hb_006810_070 Hb_007101_220--Hb_006810_070 Hb_030827_050 Hb_030827_050 Hb_007101_220--Hb_030827_050 Hb_007101_220--Hb_000905_150 Hb_003238_030 Hb_003238_030 Hb_007101_220--Hb_003238_030 Hb_151497_010 Hb_151497_010 Hb_007101_220--Hb_151497_010 Hb_005510_010 Hb_005510_010 Hb_000905_150--Hb_005510_010 Hb_000181_440 Hb_000181_440 Hb_000905_150--Hb_000181_440 Hb_003096_040 Hb_003096_040 Hb_000905_150--Hb_003096_040 Hb_000101_220 Hb_000101_220 Hb_000905_150--Hb_000101_220 Hb_003656_120 Hb_003656_120 Hb_000905_150--Hb_003656_120 Hb_046198_020--Hb_000101_220 Hb_168893_010 Hb_168893_010 Hb_046198_020--Hb_168893_010 Hb_001195_190 Hb_001195_190 Hb_046198_020--Hb_001195_190 Hb_046198_020--Hb_000796_060 Hb_007382_020 Hb_007382_020 Hb_046198_020--Hb_007382_020 Hb_002188_020 Hb_002188_020 Hb_000076_170--Hb_002188_020 Hb_011928_010 Hb_011928_010 Hb_000076_170--Hb_011928_010 Hb_001524_100 Hb_001524_100 Hb_000076_170--Hb_001524_100 Hb_136872_010 Hb_136872_010 Hb_000076_170--Hb_136872_010 Hb_004266_010 Hb_004266_010 Hb_000076_170--Hb_004266_010 Hb_002588_020 Hb_002588_020 Hb_003581_160--Hb_002588_020 Hb_005654_020 Hb_005654_020 Hb_003581_160--Hb_005654_020 Hb_003581_160--Hb_000046_230 Hb_001491_060 Hb_001491_060 Hb_003581_160--Hb_001491_060 Hb_137914_010 Hb_137914_010 Hb_003581_160--Hb_137914_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.237436 0.684601 0 0.664432 5.85882 0.654496
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.37604 0

CAGE analysis