Hb_000076_170

Information

Type -
Description -
Location Contig76: 121056-124700
Sequence    

Annotation

kegg
ID rcu:RCOM_0185240
description Homeobox protein FWA, putative
nr
ID KDP39075.1
description hypothetical protein JCGZ_00832 [Jatropha curcas]
swissprot
ID Q8RWU4
description Homeobox-leucine zipper protein MERISTEM L1 OS=Arabidopsis thaliana GN=ATML1 PE=2 SV=1
trembl
ID A0A067L3J5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00832 PE=4 SV=1
Gene Ontology
ID GO:0008289
description homeobox-leucine zipper protein protodermal factor 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000076_170 0.0 - - hypothetical protein JCGZ_00832 [Jatropha curcas]
2 Hb_002188_020 0.2237143291 - - unnamed protein product [Vitis vinifera]
3 Hb_011928_010 0.2934462119 - - -
4 Hb_003117_050 0.3154772993 - - -
5 Hb_001524_100 0.3296399482 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
6 Hb_136872_010 0.3346805468 - - serine/threonine-specific receptor protein kinase, putative [Ricinus communis]
7 Hb_004266_010 0.3421229239 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
8 Hb_066415_010 0.354897091 - - -
9 Hb_002240_100 0.3565721617 - - -
10 Hb_000982_040 0.3586939881 - - conserved hypothetical protein [Ricinus communis]
11 Hb_082960_020 0.3677256049 - - hypothetical protein B456_012G107300 [Gossypium raimondii]
12 Hb_003549_070 0.3952981074 - - -
13 Hb_103494_010 0.3954878166 - - -
14 Hb_007101_220 0.3997136034 - - Gibberellin-regulated protein 3 precursor, putative [Ricinus communis]
15 Hb_007945_040 0.4047090378 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
16 Hb_000380_200 0.4063501215 - - -
17 Hb_027846_010 0.4075792854 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
18 Hb_004994_060 0.4079230806 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
19 Hb_003494_170 0.4082762517 - - -
20 Hb_000017_010 0.4083273829 - - -

Gene co-expression network

sample Hb_000076_170 Hb_000076_170 Hb_002188_020 Hb_002188_020 Hb_000076_170--Hb_002188_020 Hb_011928_010 Hb_011928_010 Hb_000076_170--Hb_011928_010 Hb_003117_050 Hb_003117_050 Hb_000076_170--Hb_003117_050 Hb_001524_100 Hb_001524_100 Hb_000076_170--Hb_001524_100 Hb_136872_010 Hb_136872_010 Hb_000076_170--Hb_136872_010 Hb_004266_010 Hb_004266_010 Hb_000076_170--Hb_004266_010 Hb_003847_010 Hb_003847_010 Hb_002188_020--Hb_003847_010 Hb_002240_100 Hb_002240_100 Hb_002188_020--Hb_002240_100 Hb_000174_280 Hb_000174_280 Hb_002188_020--Hb_000174_280 Hb_002188_020--Hb_001524_100 Hb_111985_010 Hb_111985_010 Hb_002188_020--Hb_111985_010 Hb_000982_040 Hb_000982_040 Hb_011928_010--Hb_000982_040 Hb_170935_010 Hb_170935_010 Hb_011928_010--Hb_170935_010 Hb_011928_010--Hb_001524_100 Hb_004117_300 Hb_004117_300 Hb_011928_010--Hb_004117_300 Hb_000917_140 Hb_000917_140 Hb_011928_010--Hb_000917_140 Hb_011468_010 Hb_011468_010 Hb_003117_050--Hb_011468_010 Hb_007101_220 Hb_007101_220 Hb_003117_050--Hb_007101_220 Hb_000905_150 Hb_000905_150 Hb_003117_050--Hb_000905_150 Hb_046198_020 Hb_046198_020 Hb_003117_050--Hb_046198_020 Hb_003581_160 Hb_003581_160 Hb_003117_050--Hb_003581_160 Hb_001524_100--Hb_002240_100 Hb_001226_080 Hb_001226_080 Hb_001524_100--Hb_001226_080 Hb_001524_100--Hb_003847_010 Hb_001524_100--Hb_000174_280 Hb_005803_020 Hb_005803_020 Hb_001524_100--Hb_005803_020 Hb_152439_010 Hb_152439_010 Hb_001524_100--Hb_152439_010 Hb_022819_010 Hb_022819_010 Hb_136872_010--Hb_022819_010 Hb_082960_020 Hb_082960_020 Hb_136872_010--Hb_082960_020 Hb_033555_010 Hb_033555_010 Hb_136872_010--Hb_033555_010 Hb_000735_170 Hb_000735_170 Hb_136872_010--Hb_000735_170 Hb_001652_070 Hb_001652_070 Hb_136872_010--Hb_001652_070 Hb_000679_160 Hb_000679_160 Hb_004266_010--Hb_000679_160 Hb_005181_200 Hb_005181_200 Hb_004266_010--Hb_005181_200 Hb_066415_010 Hb_066415_010 Hb_004266_010--Hb_066415_010 Hb_176012_010 Hb_176012_010 Hb_004266_010--Hb_176012_010 Hb_121921_010 Hb_121921_010 Hb_004266_010--Hb_121921_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00783943 0.0218681 0.010611
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0233341 0

CAGE analysis