Hb_005181_200

Information

Type transcription factor
Description TF Family: GRAS
Location Contig5181: 95239-106503
Sequence    

Annotation

kegg
ID rcu:RCOM_1000430
description DELLA protein RGL2, putative
nr
ID XP_012084258.1
description PREDICTED: DELLA protein RGL1-like [Jatropha curcas]
swissprot
ID Q8S4W7
description DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1
trembl
ID A0A067JYQ2
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19008 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005181_200 0.0 transcription factor TF Family: GRAS PREDICTED: DELLA protein RGL1-like [Jatropha curcas]
2 Hb_011344_100 0.2874300127 - - -
3 Hb_121921_010 0.2924558304 - - -
4 Hb_000230_310 0.3004656819 - - transferase, transferring glycosyl groups, putative [Ricinus communis]
5 Hb_115116_010 0.3118198663 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase RKS1 [Jatropha curcas]
6 Hb_004266_010 0.3129072333 - - PREDICTED: uncharacterized protein LOC105800880, partial [Gossypium raimondii]
7 Hb_002740_070 0.3223030838 - - nitrate transporter, putative [Ricinus communis]
8 Hb_034589_010 0.323747519 - - hypothetical protein MIMGU_mgv1a020753mg, partial [Erythranthe guttata]
9 Hb_001907_130 0.331149362 - - PREDICTED: CTL-like protein DDB_G0274487 isoform X1 [Jatropha curcas]
10 Hb_033594_090 0.3371494618 - - -
11 Hb_000553_070 0.3384226608 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 8 isoform X2 [Jatropha curcas]
12 Hb_170516_010 0.3485156636 - - hypothetical protein MTR_001s0023 [Medicago truncatula]
13 Hb_002447_020 0.3746316725 - - conserved hypothetical protein [Ricinus communis]
14 Hb_066415_010 0.3761116189 - - -
15 Hb_000679_160 0.3794396701 - - PREDICTED: probable carboxylesterase 17 [Jatropha curcas]
16 Hb_065452_010 0.3803143425 - - conserved hypothetical protein [Ricinus communis]
17 Hb_171276_010 0.3817050904 - - -
18 Hb_002805_100 0.3880815911 - - Receptor-like protein 12 [Morus notabilis]
19 Hb_002485_020 0.3957850799 - - metal transport family protein [Populus trichocarpa]
20 Hb_003811_010 0.3960046278 - - PREDICTED: uncharacterized protein LOC102611294 [Citrus sinensis]

Gene co-expression network

sample Hb_005181_200 Hb_005181_200 Hb_011344_100 Hb_011344_100 Hb_005181_200--Hb_011344_100 Hb_121921_010 Hb_121921_010 Hb_005181_200--Hb_121921_010 Hb_000230_310 Hb_000230_310 Hb_005181_200--Hb_000230_310 Hb_115116_010 Hb_115116_010 Hb_005181_200--Hb_115116_010 Hb_004266_010 Hb_004266_010 Hb_005181_200--Hb_004266_010 Hb_002740_070 Hb_002740_070 Hb_005181_200--Hb_002740_070 Hb_001907_130 Hb_001907_130 Hb_011344_100--Hb_001907_130 Hb_170516_010 Hb_170516_010 Hb_011344_100--Hb_170516_010 Hb_011344_100--Hb_115116_010 Hb_065452_010 Hb_065452_010 Hb_011344_100--Hb_065452_010 Hb_033594_090 Hb_033594_090 Hb_011344_100--Hb_033594_090 Hb_005464_010 Hb_005464_010 Hb_011344_100--Hb_005464_010 Hb_004208_020 Hb_004208_020 Hb_121921_010--Hb_004208_020 Hb_002437_010 Hb_002437_010 Hb_121921_010--Hb_002437_010 Hb_000147_010 Hb_000147_010 Hb_121921_010--Hb_000147_010 Hb_121921_010--Hb_011344_100 Hb_000544_130 Hb_000544_130 Hb_121921_010--Hb_000544_130 Hb_034589_010 Hb_034589_010 Hb_000230_310--Hb_034589_010 Hb_000230_310--Hb_002740_070 Hb_071116_010 Hb_071116_010 Hb_000230_310--Hb_071116_010 Hb_002217_410 Hb_002217_410 Hb_000230_310--Hb_002217_410 Hb_000553_070 Hb_000553_070 Hb_000230_310--Hb_000553_070 Hb_000104_070 Hb_000104_070 Hb_000230_310--Hb_000104_070 Hb_115116_010--Hb_170516_010 Hb_115116_010--Hb_001907_130 Hb_000413_150 Hb_000413_150 Hb_115116_010--Hb_000413_150 Hb_005675_060 Hb_005675_060 Hb_115116_010--Hb_005675_060 Hb_014919_020 Hb_014919_020 Hb_115116_010--Hb_014919_020 Hb_000679_160 Hb_000679_160 Hb_004266_010--Hb_000679_160 Hb_066415_010 Hb_066415_010 Hb_004266_010--Hb_066415_010 Hb_176012_010 Hb_176012_010 Hb_004266_010--Hb_176012_010 Hb_004266_010--Hb_121921_010 Hb_000076_170 Hb_000076_170 Hb_004266_010--Hb_000076_170 Hb_002740_070--Hb_071116_010 Hb_002740_070--Hb_000553_070 Hb_001862_080 Hb_001862_080 Hb_002740_070--Hb_001862_080 Hb_002740_070--Hb_034589_010 Hb_002228_130 Hb_002228_130 Hb_002740_070--Hb_002228_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0.00276097 0.00481701 0.00710983 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00250444 0

CAGE analysis