Hb_176012_010

Information

Type -
Description -
Location Contig176012: 431-1396
Sequence    

Annotation

kegg
ID rcu:RCOM_0446220
description hypothetical protein
nr
ID XP_002534370.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T801
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0446220 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_176012_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_118707_010 0.0178263652 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
3 Hb_001862_020 0.2365029203 - - PREDICTED: uncharacterized protein LOC103652604 [Zea mays]
4 Hb_146361_020 0.2366060861 - - PREDICTED: germin-like protein subfamily 1 member 11 [Jatropha curcas]
5 Hb_003407_020 0.2366208671 - - hypothetical protein JCGZ_01308 [Jatropha curcas]
6 Hb_186115_010 0.236666239 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
7 Hb_002903_030 0.2373128603 - - polyphenol oxidase [Cydonia oblonga]
8 Hb_176232_040 0.2377464698 - - conserved hypothetical protein [Ricinus communis]
9 Hb_012355_010 0.2394352028 - - PREDICTED: probable protein Pop3 [Jatropha curcas]
10 Hb_003938_220 0.240916587 transcription factor TF Family: LOB LOB domain-containing protein, putative [Ricinus communis]
11 Hb_156683_010 0.2427179512 - - PREDICTED: uncharacterized protein At5g65660-like [Jatropha curcas]
12 Hb_000028_540 0.2431566506 - - hypothetical protein POPTR_0012s03720g [Populus trichocarpa]
13 Hb_002231_140 0.2436477619 - - PREDICTED: uncharacterized protein LOC105634453 [Jatropha curcas]
14 Hb_005656_110 0.2439492533 - - cytochrome P450, putative [Ricinus communis]
15 Hb_000248_090 0.2465049883 - - PREDICTED: uncharacterized protein LOC104110417 [Nicotiana tomentosiformis]
16 Hb_006142_010 0.2495379227 - - hypothetical protein CICLE_v10013815mg, partial [Citrus clementina]
17 Hb_001863_050 0.2515524885 - - PREDICTED: wall-associated receptor kinase-like 8 [Jatropha curcas]
18 Hb_000115_180 0.2527037108 - - hypothetical protein RCOM_1308310 [Ricinus communis]
19 Hb_022425_010 0.254077817 - - Xyloglucan endotransglucosylase/hydrolase protein 14 precursor, putative [Ricinus communis]
20 Hb_004607_010 0.2559644133 - - -

Gene co-expression network

sample Hb_176012_010 Hb_176012_010 Hb_118707_010 Hb_118707_010 Hb_176012_010--Hb_118707_010 Hb_001862_020 Hb_001862_020 Hb_176012_010--Hb_001862_020 Hb_146361_020 Hb_146361_020 Hb_176012_010--Hb_146361_020 Hb_003407_020 Hb_003407_020 Hb_176012_010--Hb_003407_020 Hb_186115_010 Hb_186115_010 Hb_176012_010--Hb_186115_010 Hb_002903_030 Hb_002903_030 Hb_176012_010--Hb_002903_030 Hb_118707_010--Hb_001862_020 Hb_118707_010--Hb_003407_020 Hb_118707_010--Hb_146361_020 Hb_118707_010--Hb_186115_010 Hb_176232_040 Hb_176232_040 Hb_118707_010--Hb_176232_040 Hb_001862_020--Hb_003407_020 Hb_001862_020--Hb_146361_020 Hb_001862_020--Hb_186115_010 Hb_001862_020--Hb_176232_040 Hb_001862_020--Hb_002903_030 Hb_012355_010 Hb_012355_010 Hb_001862_020--Hb_012355_010 Hb_146361_020--Hb_186115_010 Hb_146361_020--Hb_002903_030 Hb_146361_020--Hb_003407_020 Hb_146361_020--Hb_176232_040 Hb_003938_220 Hb_003938_220 Hb_146361_020--Hb_003938_220 Hb_003407_020--Hb_176232_040 Hb_003407_020--Hb_186115_010 Hb_003407_020--Hb_002903_030 Hb_003407_020--Hb_012355_010 Hb_186115_010--Hb_002903_030 Hb_186115_010--Hb_176232_040 Hb_186115_010--Hb_003938_220 Hb_002903_030--Hb_003938_220 Hb_005656_110 Hb_005656_110 Hb_002903_030--Hb_005656_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.209568 0.0754397 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.417232 0

CAGE analysis