Hb_003581_160

Information

Type -
Description -
Location Contig3581: 130735-131977
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003581_160 0.0 - - -
2 Hb_002588_020 0.163477609 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
3 Hb_005654_020 0.246312523 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
4 Hb_011468_010 0.2503585741 - - hypothetical protein B456_008G198600 [Gossypium raimondii]
5 Hb_000046_230 0.2685114 - - PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
6 Hb_001491_060 0.2792821887 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like isoform X1 [Populus euphratica]
7 Hb_137914_010 0.3015371562 - - hypothetical protein CISIN_1g022501mg [Citrus sinensis]
8 Hb_003117_050 0.3335189931 - - -
9 Hb_145708_010 0.334998398 - - PREDICTED: transcription factor ILR3-like isoform X1 [Jatropha curcas]
10 Hb_038190_040 0.3375814933 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
11 Hb_003438_060 0.3377791529 - - -
12 Hb_000740_030 0.3405416654 - - hypothetical protein VITISV_038271 [Vitis vinifera]
13 Hb_046198_020 0.354494712 - - conserved hypothetical protein [Ricinus communis]
14 Hb_048476_160 0.3578193979 - - hypothetical protein JCGZ_19593 [Jatropha curcas]
15 Hb_011344_100 0.3597356239 - - -
16 Hb_066415_010 0.3766848644 - - -
17 Hb_001477_040 0.3775379426 - - PREDICTED: receptor-like protein kinase HSL1 [Jatropha curcas]
18 Hb_170516_010 0.3791449854 - - hypothetical protein MTR_001s0023 [Medicago truncatula]
19 Hb_000905_150 0.3826212273 - - Cytochrome P450 [Theobroma cacao]
20 Hb_003793_050 0.3873684545 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]

Gene co-expression network

sample Hb_003581_160 Hb_003581_160 Hb_002588_020 Hb_002588_020 Hb_003581_160--Hb_002588_020 Hb_005654_020 Hb_005654_020 Hb_003581_160--Hb_005654_020 Hb_011468_010 Hb_011468_010 Hb_003581_160--Hb_011468_010 Hb_000046_230 Hb_000046_230 Hb_003581_160--Hb_000046_230 Hb_001491_060 Hb_001491_060 Hb_003581_160--Hb_001491_060 Hb_137914_010 Hb_137914_010 Hb_003581_160--Hb_137914_010 Hb_002588_020--Hb_137914_010 Hb_002588_020--Hb_001491_060 Hb_002588_020--Hb_000046_230 Hb_011344_100 Hb_011344_100 Hb_002588_020--Hb_011344_100 Hb_001269_280 Hb_001269_280 Hb_002588_020--Hb_001269_280 Hb_145708_010 Hb_145708_010 Hb_005654_020--Hb_145708_010 Hb_003438_060 Hb_003438_060 Hb_005654_020--Hb_003438_060 Hb_102129_010 Hb_102129_010 Hb_005654_020--Hb_102129_010 Hb_048476_160 Hb_048476_160 Hb_005654_020--Hb_048476_160 Hb_000563_580 Hb_000563_580 Hb_005654_020--Hb_000563_580 Hb_003117_050 Hb_003117_050 Hb_011468_010--Hb_003117_050 Hb_046198_020 Hb_046198_020 Hb_011468_010--Hb_046198_020 Hb_000796_060 Hb_000796_060 Hb_011468_010--Hb_000796_060 Hb_013394_090 Hb_013394_090 Hb_011468_010--Hb_013394_090 Hb_011468_010--Hb_000046_230 Hb_038190_040 Hb_038190_040 Hb_000046_230--Hb_038190_040 Hb_000740_030 Hb_000740_030 Hb_000046_230--Hb_000740_030 Hb_004604_020 Hb_004604_020 Hb_000046_230--Hb_004604_020 Hb_001999_190 Hb_001999_190 Hb_001491_060--Hb_001999_190 Hb_001491_060--Hb_137914_010 Hb_002542_120 Hb_002542_120 Hb_001491_060--Hb_002542_120 Hb_001148_020 Hb_001148_020 Hb_001491_060--Hb_001148_020 Hb_000017_150 Hb_000017_150 Hb_137914_010--Hb_000017_150 Hb_010398_010 Hb_010398_010 Hb_137914_010--Hb_010398_010 Hb_001477_040 Hb_001477_040 Hb_137914_010--Hb_001477_040 Hb_001608_020 Hb_001608_020 Hb_137914_010--Hb_001608_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.132305 0 0.126414 0.373449 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0597884 0

CAGE analysis