Hb_004604_020

Information

Type -
Description -
Location Contig4604: 19524-21168
Sequence    

Annotation

kegg
ID sot:102581016
description uncharacterized LOC102581016
nr
ID XP_006360638.1
description PREDICTED: uncharacterized protein LOC102581016 [Solanum tuberosum]
swissprot
ID -
description -
trembl
ID M1DZA5
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400046383 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_004604_020 0.0 - - PREDICTED: uncharacterized protein LOC102581016 [Solanum tuberosum]
2 Hb_047923_020 0.0993220534 - - polyprotein [Citrus endogenous pararetrovirus]
3 Hb_003793_020 0.1211476808 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004041_070 0.2134507747 - - conserved hypothetical protein [Ricinus communis]
5 Hb_004044_060 0.2331682577 - - conserved hypothetical protein [Ricinus communis]
6 Hb_000009_260 0.2407208788 - - PREDICTED: probable vacuolar amino acid transporter YPQ1 isoform X1 [Jatropha curcas]
7 Hb_000046_230 0.2449694819 - - PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
8 Hb_000740_030 0.2463463188 - - hypothetical protein VITISV_038271 [Vitis vinifera]
9 Hb_038190_040 0.2546973132 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
10 Hb_000438_040 0.2670501112 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
11 Hb_102408_010 0.2998999759 - - hypothetical protein JCGZ_27060 [Jatropha curcas]
12 Hb_000184_080 0.3005131895 - - contains similarity to reverse transcriptase (Pfam: rvt.hmm, score 19.29) [Arabidopsis thaliana]
13 Hb_004324_410 0.3317214345 - - hypothetical protein JCGZ_26025 [Jatropha curcas]
14 Hb_133862_010 0.3320656003 - - hypothetical protein POPTR_0009s13360g [Populus trichocarpa]
15 Hb_135941_010 0.3320915475 - - hypothetical protein JCGZ_13805 [Jatropha curcas]
16 Hb_001066_020 0.3323494654 - - PREDICTED: uncharacterized protein LOC104908874, partial [Beta vulgaris subsp. vulgaris]
17 Hb_012264_040 0.3324189641 - - -
18 Hb_005432_050 0.3339145644 - - PREDICTED: uncharacterized protein LOC105772114 [Gossypium raimondii]
19 Hb_008424_010 0.3387467709 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_000016_010 0.3389899734 - - PREDICTED: uncharacterized protein LOC105631113 [Jatropha curcas]

Gene co-expression network

sample Hb_004604_020 Hb_004604_020 Hb_047923_020 Hb_047923_020 Hb_004604_020--Hb_047923_020 Hb_003793_020 Hb_003793_020 Hb_004604_020--Hb_003793_020 Hb_004041_070 Hb_004041_070 Hb_004604_020--Hb_004041_070 Hb_004044_060 Hb_004044_060 Hb_004604_020--Hb_004044_060 Hb_000009_260 Hb_000009_260 Hb_004604_020--Hb_000009_260 Hb_000046_230 Hb_000046_230 Hb_004604_020--Hb_000046_230 Hb_047923_020--Hb_003793_020 Hb_047923_020--Hb_004044_060 Hb_000438_040 Hb_000438_040 Hb_047923_020--Hb_000438_040 Hb_047923_020--Hb_004041_070 Hb_047923_020--Hb_000009_260 Hb_003793_020--Hb_004041_070 Hb_003793_020--Hb_000009_260 Hb_003793_020--Hb_004044_060 Hb_102408_010 Hb_102408_010 Hb_003793_020--Hb_102408_010 Hb_004041_070--Hb_102408_010 Hb_004041_070--Hb_000009_260 Hb_012278_010 Hb_012278_010 Hb_004041_070--Hb_012278_010 Hb_004041_070--Hb_004044_060 Hb_004044_060--Hb_000009_260 Hb_128912_010 Hb_128912_010 Hb_004044_060--Hb_128912_010 Hb_001545_220 Hb_001545_220 Hb_004044_060--Hb_001545_220 Hb_004324_410 Hb_004324_410 Hb_004044_060--Hb_004324_410 Hb_000009_260--Hb_102408_010 Hb_000009_260--Hb_012278_010 Hb_000009_260--Hb_004324_410 Hb_038190_040 Hb_038190_040 Hb_000046_230--Hb_038190_040 Hb_000740_030 Hb_000740_030 Hb_000046_230--Hb_000740_030 Hb_003581_160 Hb_003581_160 Hb_000046_230--Hb_003581_160 Hb_002588_020 Hb_002588_020 Hb_000046_230--Hb_002588_020 Hb_011468_010 Hb_011468_010 Hb_000046_230--Hb_011468_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0481032 0 0 0.0261999 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0190207 0

CAGE analysis