Hb_011468_010

Information

Type -
Description -
Location Contig11468: 4387-6870
Sequence    

Annotation

kegg
ID -
description -
nr
ID KJB51042.1
description hypothetical protein B456_008G198600 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A0D2PYA6
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G198600 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_011468_010 0.0 - - hypothetical protein B456_008G198600 [Gossypium raimondii]
2 Hb_003117_050 0.2209047969 - - -
3 Hb_003581_160 0.2503585741 - - -
4 Hb_046198_020 0.274024832 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000796_060 0.2808908564 - - Glycogenin-2 [Aegilops tauschii]
6 Hb_013394_090 0.2854975419 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000046_230 0.2909024533 - - PREDICTED: chromatin structure-remodeling complex protein SYD-like [Jatropha curcas]
8 Hb_000740_030 0.293514245 - - hypothetical protein VITISV_038271 [Vitis vinifera]
9 Hb_000905_150 0.298570288 - - Cytochrome P450 [Theobroma cacao]
10 Hb_038190_040 0.3039828675 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
11 Hb_001104_040 0.3082413497 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]
12 Hb_184326_010 0.3114146852 - - RecName: Full=Anthocyanidin 3-O-glucosyltransferase 1; AltName: Full=Flavonol 3-O-glucosyltransferase 1; AltName: Full=UDP-glucose flavonoid 3-O-glucosyltransferase 1 [Manihot esculenta]
13 Hb_005730_100 0.3121097565 - - PREDICTED: 18.2 kDa class I heat shock protein-like [Gossypium raimondii]
14 Hb_002588_020 0.3189527168 - - retrotransposon protein, putative, unclassified [Oryza sativa Japonica Group]
15 Hb_003647_120 0.3213097817 - - 18.2 kDa class I heat shock family protein [Populus trichocarpa]
16 Hb_048207_010 0.3258164911 - - heat-shock protein, putative [Ricinus communis]
17 Hb_002890_190 0.3284610248 - - PREDICTED: 22.0 kDa class IV heat shock protein-like [Jatropha curcas]
18 Hb_001279_230 0.3306082428 - - PREDICTED: class I heat shock protein-like [Jatropha curcas]
19 Hb_168893_010 0.3324666784 - - PREDICTED: 17.3 kDa class I heat shock protein-like [Nelumbo nucifera]
20 Hb_004529_020 0.3334792228 - - PREDICTED: uncharacterized protein LOC105629509 [Jatropha curcas]

Gene co-expression network

sample Hb_011468_010 Hb_011468_010 Hb_003117_050 Hb_003117_050 Hb_011468_010--Hb_003117_050 Hb_003581_160 Hb_003581_160 Hb_011468_010--Hb_003581_160 Hb_046198_020 Hb_046198_020 Hb_011468_010--Hb_046198_020 Hb_000796_060 Hb_000796_060 Hb_011468_010--Hb_000796_060 Hb_013394_090 Hb_013394_090 Hb_011468_010--Hb_013394_090 Hb_000046_230 Hb_000046_230 Hb_011468_010--Hb_000046_230 Hb_007101_220 Hb_007101_220 Hb_003117_050--Hb_007101_220 Hb_000905_150 Hb_000905_150 Hb_003117_050--Hb_000905_150 Hb_003117_050--Hb_046198_020 Hb_000076_170 Hb_000076_170 Hb_003117_050--Hb_000076_170 Hb_003117_050--Hb_003581_160 Hb_002588_020 Hb_002588_020 Hb_003581_160--Hb_002588_020 Hb_005654_020 Hb_005654_020 Hb_003581_160--Hb_005654_020 Hb_003581_160--Hb_000046_230 Hb_001491_060 Hb_001491_060 Hb_003581_160--Hb_001491_060 Hb_137914_010 Hb_137914_010 Hb_003581_160--Hb_137914_010 Hb_000101_220 Hb_000101_220 Hb_046198_020--Hb_000101_220 Hb_168893_010 Hb_168893_010 Hb_046198_020--Hb_168893_010 Hb_001195_190 Hb_001195_190 Hb_046198_020--Hb_001195_190 Hb_046198_020--Hb_000796_060 Hb_007382_020 Hb_007382_020 Hb_046198_020--Hb_007382_020 Hb_048207_010 Hb_048207_010 Hb_000796_060--Hb_048207_010 Hb_000796_060--Hb_168893_010 Hb_005730_100 Hb_005730_100 Hb_000796_060--Hb_005730_100 Hb_001104_040 Hb_001104_040 Hb_000796_060--Hb_001104_040 Hb_001279_230 Hb_001279_230 Hb_000796_060--Hb_001279_230 Hb_000398_130 Hb_000398_130 Hb_000796_060--Hb_000398_130 Hb_005730_080 Hb_005730_080 Hb_013394_090--Hb_005730_080 Hb_002595_100 Hb_002595_100 Hb_013394_090--Hb_002595_100 Hb_002890_190 Hb_002890_190 Hb_013394_090--Hb_002890_190 Hb_116436_010 Hb_116436_010 Hb_013394_090--Hb_116436_010 Hb_002073_070 Hb_002073_070 Hb_013394_090--Hb_002073_070 Hb_000005_040 Hb_000005_040 Hb_013394_090--Hb_000005_040 Hb_038190_040 Hb_038190_040 Hb_000046_230--Hb_038190_040 Hb_000740_030 Hb_000740_030 Hb_000046_230--Hb_000740_030 Hb_004604_020 Hb_004604_020 Hb_000046_230--Hb_004604_020 Hb_000046_230--Hb_002588_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0328338 0 0.0104724 0.114926 0.0131808
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0189091 0

CAGE analysis