Hb_002542_120

Information

Type transcription factor
Description TF Family: C2H2
Location Contig2542: 128364-131076
Sequence    

Annotation

kegg
ID rcu:RCOM_0555270
description nucleic acid binding protein, putative
nr
ID XP_012082706.1
description PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
swissprot
ID Q9SCQ6
description Protein indeterminate-domain 2 OS=Arabidopsis thaliana GN=IDD2 PE=2 SV=1
trembl
ID B9S3T6
description Nucleic acid binding protein, putative OS=Ricinus communis GN=RCOM_0555270 PE=4 SV=1
Gene Ontology
ID GO:0003676
description protein indeterminate-domain 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002542_120 0.0 transcription factor TF Family: C2H2 PREDICTED: protein indeterminate-domain 2-like [Jatropha curcas]
2 Hb_009189_040 0.2351453692 - - PREDICTED: uncharacterized protein LOC104446949 [Eucalyptus grandis]
3 Hb_001491_060 0.2547032064 - - PREDICTED: glycerol-3-phosphate 2-O-acyltransferase 6-like isoform X1 [Populus euphratica]
4 Hb_005608_010 0.2715902763 - - PREDICTED: U-box domain-containing protein 40 [Jatropha curcas]
5 Hb_003222_010 0.3028788876 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
6 Hb_007926_010 0.3139108922 - - PREDICTED: UPF0554 protein C2orf43 homolog isoform X4 [Citrus sinensis]
7 Hb_004330_030 0.331266661 - - -
8 Hb_003438_060 0.3372234144 - - -
9 Hb_179679_010 0.3379939052 - - PREDICTED: putative receptor-like protein kinase At4g00960 [Fragaria vesca subsp. vesca]
10 Hb_084426_010 0.3432229991 - - -
11 Hb_001214_170 0.3488119843 - - pyruvate kinase family protein [Medicago truncatula]
12 Hb_161023_010 0.3491840103 - - PREDICTED: uncharacterized protein LOC105639929 [Jatropha curcas]
13 Hb_002039_050 0.3509876802 - - PREDICTED: U-box domain-containing protein 40 [Jatropha curcas]
14 Hb_000122_060 0.351964201 - - PREDICTED: protein LURP-one-related 14 [Jatropha curcas]
15 Hb_045370_010 0.3539915669 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003362_060 0.3545611809 - - -
17 Hb_120662_010 0.3554250046 - - hypothetical protein POPTR_0006s18790g [Populus trichocarpa]
18 Hb_111876_010 0.3566582901 - - Auxin response factor, putative [Ricinus communis]
19 Hb_131949_010 0.3588839185 - - PREDICTED: uncharacterized protein LOC104227863, partial [Nicotiana sylvestris]
20 Hb_005504_020 0.3627796986 - - -

Gene co-expression network

sample Hb_002542_120 Hb_002542_120 Hb_009189_040 Hb_009189_040 Hb_002542_120--Hb_009189_040 Hb_001491_060 Hb_001491_060 Hb_002542_120--Hb_001491_060 Hb_005608_010 Hb_005608_010 Hb_002542_120--Hb_005608_010 Hb_003222_010 Hb_003222_010 Hb_002542_120--Hb_003222_010 Hb_007926_010 Hb_007926_010 Hb_002542_120--Hb_007926_010 Hb_004330_030 Hb_004330_030 Hb_002542_120--Hb_004330_030 Hb_009189_040--Hb_007926_010 Hb_015928_020 Hb_015928_020 Hb_009189_040--Hb_015928_020 Hb_179679_010 Hb_179679_010 Hb_009189_040--Hb_179679_010 Hb_009189_040--Hb_003222_010 Hb_002196_010 Hb_002196_010 Hb_009189_040--Hb_002196_010 Hb_001999_190 Hb_001999_190 Hb_001491_060--Hb_001999_190 Hb_137914_010 Hb_137914_010 Hb_001491_060--Hb_137914_010 Hb_002588_020 Hb_002588_020 Hb_001491_060--Hb_002588_020 Hb_003581_160 Hb_003581_160 Hb_001491_060--Hb_003581_160 Hb_001148_020 Hb_001148_020 Hb_001491_060--Hb_001148_020 Hb_000260_370 Hb_000260_370 Hb_005608_010--Hb_000260_370 Hb_007192_060 Hb_007192_060 Hb_005608_010--Hb_007192_060 Hb_000062_030 Hb_000062_030 Hb_005608_010--Hb_000062_030 Hb_007044_010 Hb_007044_010 Hb_005608_010--Hb_007044_010 Hb_008616_030 Hb_008616_030 Hb_005608_010--Hb_008616_030 Hb_031527_070 Hb_031527_070 Hb_005608_010--Hb_031527_070 Hb_009189_030 Hb_009189_030 Hb_003222_010--Hb_009189_030 Hb_001276_010 Hb_001276_010 Hb_003222_010--Hb_001276_010 Hb_001935_190 Hb_001935_190 Hb_003222_010--Hb_001935_190 Hb_004631_160 Hb_004631_160 Hb_003222_010--Hb_004631_160 Hb_120662_010 Hb_120662_010 Hb_003222_010--Hb_120662_010 Hb_001916_060 Hb_001916_060 Hb_003222_010--Hb_001916_060 Hb_001214_170 Hb_001214_170 Hb_007926_010--Hb_001214_170 Hb_007805_020 Hb_007805_020 Hb_007926_010--Hb_007805_020 Hb_007926_010--Hb_001916_060 Hb_007926_010--Hb_003222_010 Hb_054436_010 Hb_054436_010 Hb_007926_010--Hb_054436_010 Hb_001944_030 Hb_001944_030 Hb_004330_030--Hb_001944_030 Hb_000146_060 Hb_000146_060 Hb_004330_030--Hb_000146_060 Hb_004330_030--Hb_001214_170 Hb_004330_030--Hb_005608_010 Hb_004330_030--Hb_007805_020 Hb_118346_010 Hb_118346_010 Hb_004330_030--Hb_118346_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0646837 0.0799783 0 0.0617882 0.121499 0.0103337
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis