Hb_000982_040

Information

Type -
Description -
Location Contig982: 111689-112413
Sequence    

Annotation

kegg
ID rcu:RCOM_1611870
description hypothetical protein
nr
ID XP_002511711.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RDC2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1611870 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000982_040 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_000917_140 0.1994074855 - - -
3 Hb_004117_300 0.1995218161 - - -
4 Hb_181476_010 0.2002153026 - - -
5 Hb_038005_010 0.2107619449 - - PREDICTED: thaumatin-like protein [Jatropha curcas]
6 Hb_002120_020 0.2178627933 - - hypothetical protein JCGZ_18787 [Jatropha curcas]
7 Hb_184484_010 0.2213382556 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_027846_010 0.2253266467 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
9 Hb_004453_200 0.226932337 - - Boron transporter, putative [Ricinus communis]
10 Hb_007945_040 0.2834027529 - - PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
11 Hb_011928_010 0.3019121685 - - -
12 Hb_004994_060 0.3052119422 - - PREDICTED: BON1-associated protein 2-like [Jatropha curcas]
13 Hb_003494_170 0.3070812074 - - -
14 Hb_000017_010 0.3073468707 - - -
15 Hb_002028_080 0.3076394294 - - hypothetical protein JCGZ_07571 [Jatropha curcas]
16 Hb_077421_010 0.3077975069 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
17 Hb_011269_050 0.3091821868 - - -
18 Hb_001827_020 0.309754518 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
19 Hb_001768_030 0.3126606916 - - -
20 Hb_000922_230 0.3139706288 - - -

Gene co-expression network

sample Hb_000982_040 Hb_000982_040 Hb_000917_140 Hb_000917_140 Hb_000982_040--Hb_000917_140 Hb_004117_300 Hb_004117_300 Hb_000982_040--Hb_004117_300 Hb_181476_010 Hb_181476_010 Hb_000982_040--Hb_181476_010 Hb_038005_010 Hb_038005_010 Hb_000982_040--Hb_038005_010 Hb_002120_020 Hb_002120_020 Hb_000982_040--Hb_002120_020 Hb_184484_010 Hb_184484_010 Hb_000982_040--Hb_184484_010 Hb_000917_140--Hb_004117_300 Hb_000917_140--Hb_181476_010 Hb_000917_140--Hb_038005_010 Hb_000917_140--Hb_002120_020 Hb_000917_140--Hb_184484_010 Hb_027846_010 Hb_027846_010 Hb_000917_140--Hb_027846_010 Hb_004117_300--Hb_181476_010 Hb_004117_300--Hb_038005_010 Hb_004117_300--Hb_002120_020 Hb_004117_300--Hb_184484_010 Hb_004117_300--Hb_027846_010 Hb_181476_010--Hb_038005_010 Hb_181476_010--Hb_002120_020 Hb_181476_010--Hb_184484_010 Hb_181476_010--Hb_027846_010 Hb_038005_010--Hb_002120_020 Hb_038005_010--Hb_184484_010 Hb_038005_010--Hb_027846_010 Hb_002120_020--Hb_184484_010 Hb_002120_020--Hb_027846_010 Hb_184484_010--Hb_027846_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0333794 0.0636861 0.0368324 0.70447 0.0702198
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.73267 0

CAGE analysis