Hb_002188_020

Information

Type -
Description -
Location Contig2188: 2756-9707
Sequence    

Annotation

kegg
ID mdm:103412815
description LRR receptor-like serine/threonine-protein kinase GSO1
nr
ID CBI24590.3
description unnamed protein product [Vitis vinifera]
swissprot
ID -
description -
trembl
ID F6HAU3
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_16s0022g00620 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002188_020 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000076_170 0.2237143291 - - hypothetical protein JCGZ_00832 [Jatropha curcas]
3 Hb_003847_010 0.2880145344 - - -
4 Hb_002240_100 0.2887444852 - - -
5 Hb_000174_280 0.300502506 - - -
6 Hb_001524_100 0.3091878815 - - PREDICTED: uncharacterized protein LOC105635099 [Jatropha curcas]
7 Hb_111985_010 0.3260668226 - - -
8 Hb_001226_080 0.3305981023 - - heat-shock protein, putative [Ricinus communis]
9 Hb_152439_010 0.3448100648 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
10 Hb_182823_010 0.3577049668 - - PREDICTED: thylakoidal processing peptidase 1, chloroplastic-like [Jatropha curcas]
11 Hb_011645_030 0.3663379315 - - -
12 Hb_003266_040 0.370070098 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
13 Hb_058702_020 0.371253868 - - PREDICTED: uncharacterized protein LOC104604814 [Nelumbo nucifera]
14 Hb_011928_010 0.3765140105 - - -
15 Hb_001935_180 0.378215371 - - hypothetical protein VITISV_028082 [Vitis vinifera]
16 Hb_004361_010 0.382956312 - - hypothetical protein CISIN_1g047084mg, partial [Citrus sinensis]
17 Hb_000021_100 0.3831161742 - - -
18 Hb_004770_060 0.3836659909 - - unnamed protein product, partial [Coffea canephora]
19 Hb_178613_010 0.3852177566 - - PREDICTED: uncharacterized protein LOC105796032 [Gossypium raimondii]
20 Hb_011639_090 0.3869491473 - - PREDICTED: transcription factor bHLH75-like [Populus euphratica]

Gene co-expression network

sample Hb_002188_020 Hb_002188_020 Hb_000076_170 Hb_000076_170 Hb_002188_020--Hb_000076_170 Hb_003847_010 Hb_003847_010 Hb_002188_020--Hb_003847_010 Hb_002240_100 Hb_002240_100 Hb_002188_020--Hb_002240_100 Hb_000174_280 Hb_000174_280 Hb_002188_020--Hb_000174_280 Hb_001524_100 Hb_001524_100 Hb_002188_020--Hb_001524_100 Hb_111985_010 Hb_111985_010 Hb_002188_020--Hb_111985_010 Hb_011928_010 Hb_011928_010 Hb_000076_170--Hb_011928_010 Hb_003117_050 Hb_003117_050 Hb_000076_170--Hb_003117_050 Hb_000076_170--Hb_001524_100 Hb_136872_010 Hb_136872_010 Hb_000076_170--Hb_136872_010 Hb_004266_010 Hb_004266_010 Hb_000076_170--Hb_004266_010 Hb_003847_010--Hb_000174_280 Hb_001226_080 Hb_001226_080 Hb_003847_010--Hb_001226_080 Hb_003847_010--Hb_002240_100 Hb_012340_040 Hb_012340_040 Hb_003847_010--Hb_012340_040 Hb_004829_020 Hb_004829_020 Hb_003847_010--Hb_004829_020 Hb_152439_010 Hb_152439_010 Hb_003847_010--Hb_152439_010 Hb_002240_100--Hb_001524_100 Hb_002240_100--Hb_001226_080 Hb_002240_100--Hb_000174_280 Hb_002240_100--Hb_152439_010 Hb_178613_010 Hb_178613_010 Hb_002240_100--Hb_178613_010 Hb_000174_280--Hb_012340_040 Hb_000174_280--Hb_004829_020 Hb_000174_280--Hb_001226_080 Hb_062858_010 Hb_062858_010 Hb_000174_280--Hb_062858_010 Hb_001524_100--Hb_001226_080 Hb_001524_100--Hb_003847_010 Hb_001524_100--Hb_000174_280 Hb_005803_020 Hb_005803_020 Hb_001524_100--Hb_005803_020 Hb_001524_100--Hb_152439_010 Hb_004361_010 Hb_004361_010 Hb_111985_010--Hb_004361_010 Hb_000836_100 Hb_000836_100 Hb_111985_010--Hb_000836_100 Hb_176685_010 Hb_176685_010 Hb_111985_010--Hb_176685_010 Hb_174547_010 Hb_174547_010 Hb_111985_010--Hb_174547_010 Hb_003266_040 Hb_003266_040 Hb_111985_010--Hb_003266_040 Hb_000869_060 Hb_000869_060 Hb_111985_010--Hb_000869_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.026815 0.054402 0.0769189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0424516 0

CAGE analysis